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美国北卡罗来纳州和南卡罗来纳州与草坪草相关的植物寄生线虫的分子特征及系统发育关系

Molecular Characterization and Phylogenetic Relationships of Plant-Parasitic Nematodes Associated with Turfgrasses in North Carolina and South Carolina, United States.

作者信息

Zeng Yongsan, Ye Weimin, Kerns James, Tredway Lane, Martin Samuel, Martin Matt

机构信息

Department of Plant Protection, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, People's Republic of China; Department of Plant Pathology, North Carolina State University, Raleigh 27695.

Nematode Assay Section, Agronomic Division, North Carolina Department of Agriculture and Consumer Services, Raleigh 27607.

出版信息

Plant Dis. 2015 Jul;99(7):982-993. doi: 10.1094/PDIS-10-14-1060-RE. Epub 2015 May 22.

Abstract

The near-full-length 18S ribosomal DNA (rDNA) gene and internal transcribed spacer 1 region were amplified and sequenced from 52 nematode populations belonging to 28 representative species in 13 families recovered from turfgrasses in North Carolina (38 populations) and South Carolina (14 populations). This study also included 13 nematode populations from eight other plant hosts from North Carolina for comparison. Nematodes were molecularly characterized and the phylogenetic relationships were explored based on 18S rDNA sequences. Phylogenetic analysis using Bayesian inference was performed using five groups of the plant-parasitic nematode populations Tylenchids, Criconematids, Longidorids, Xiphinematids, and Trichodorids. The 65 nematode populations were clustered correspondingly within appropriate positions of 13 families, including Belonolaimidae, Caloosiidae, Criconematidae, Dolichodoridae, Hemicycliophoridae, Hoplolaimidae, Heteroderidae, Longidoridae, Meloidogynidae, Paratylenchidae, Pratylenchidae, Telotylenchidae, and Trichodoridae. This study confirms previous morphological-based identification of the plant-parasitic nematode species found in turfgrasses and provides a framework for future studies of plant-parasitic nematodes associated with turfgrasses based upon DNA sequences and phylogenetic relationships.

摘要

从北卡罗来纳州(38个种群)和南卡罗来纳州(14个种群)的草坪草中采集的13个科的28个代表性物种的52个线虫种群,扩增并测序了近乎全长的18S核糖体DNA(rDNA)基因和内转录间隔区1区域。本研究还包括从北卡罗来纳州其他八种植物寄主中采集的13个线虫种群作为对照。对线虫进行了分子特征分析,并基于18S rDNA序列探索了系统发育关系。使用贝叶斯推断对植物寄生线虫种群的五个类群(垫刃线虫类、环线虫类、长针线虫类、剑线虫类和毛刺线虫类)进行了系统发育分析。这65个线虫种群相应地聚类在13个科的适当位置内,包括长针线虫科、卡洛西线虫科、环线虫科、长毛刺线虫科、半轮线虫科、盘旋线虫科、异皮线虫科、长针线虫科、根结线虫科、拟盘旋线虫科、短体线虫科、尾垫刃线虫科和毛刺线虫科。本研究证实了先前基于形态学对草坪草中发现的植物寄生线虫物种的鉴定,并为未来基于DNA序列和系统发育关系对与草坪草相关的植物寄生线虫的研究提供了框架。

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