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本文引用的文献

1
Substitution of a conserved catalytic dyad into 2-KPCC causes loss of carboxylation activity.将保守的催化二元体替换到2-KPCC中会导致羧化活性丧失。
FEBS Lett. 2016 Sep;590(17):2991-6. doi: 10.1002/1873-3468.12325. Epub 2016 Aug 9.
2
Reactivity of thioredoxin as a protein thiol-disulfide oxidoreductase.硫氧还蛋白作为一种蛋白质硫醇-二硫键氧化还原酶的反应活性。
Chem Rev. 2011 Sep 14;111(9):5768-83. doi: 10.1021/cr100006x. Epub 2011 Jul 27.
3
Roles of the redox-active disulfide and histidine residues forming a catalytic dyad in reactions catalyzed by 2-ketopropyl coenzyme M oxidoreductase/carboxylase.在 2-酮丙基辅酶 M 氧化还原酶/羧化酶催化的反应中,形成催化双功能基的氧化还原活性二硫键和组氨酸残基的作用。
J Bacteriol. 2011 Sep;193(18):4904-13. doi: 10.1128/JB.05231-11. Epub 2011 Jul 15.
4
Mechanism of inhibition of aliphatic epoxide carboxylation by the coenzyme M analog 2-bromoethanesulfonate.2-溴乙磺酸盐抑制脂环氧化物羧化作用的机制。
J Biol Chem. 2010 Aug 13;285(33):25232-42. doi: 10.1074/jbc.M110.144410. Epub 2010 Jun 15.
5
Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.酶活性位点中催化基团pKa值扰动的结构基础。
IUBMB Life. 2002 Feb;53(2):85-98. doi: 10.1080/15216540211468.
6
Mechanism of Rubisco: The Carbamate as General Base.核酮糖-1,5-二磷酸羧化酶/加氧酶的作用机制:作为通用碱的氨基甲酸盐
Chem Rev. 1998 Apr 2;98(2):549-562. doi: 10.1021/cr970010r.
7
Thioredoxin reductase two modes of catalysis have evolved.硫氧还蛋白还原酶已进化出两种催化模式。
Eur J Biochem. 2000 Oct;267(20):6110-7. doi: 10.1046/j.1432-1327.2000.01702.x.
8
Characterization of five catalytic activities associated with the NADPH:2-ketopropyl-coenzyme M [2-(2-ketopropylthio)ethanesulfonate] oxidoreductase/carboxylase of the Xanthobacter strain Py2 epoxide carboxylase system.与黄杆菌属菌株Py2环氧化物羧化酶系统的NADPH:2-酮丙基-辅酶M [2-(2-酮丙硫基)乙烷磺酸盐]氧化还原酶/羧化酶相关的五种催化活性的表征
Biochemistry. 2000 Feb 15;39(6):1294-304. doi: 10.1021/bi992282p.
9
Redox potentials for yeast, Escherichia coli and human glutathione reductase relative to the NAD+/NADH redox couple: enzyme forms active in catalysis.相对于NAD⁺/NADH氧化还原对,酵母、大肠杆菌和人谷胱甘肽还原酶的氧化还原电位:催化活性酶形式。
Biochemistry. 1998 Nov 3;37(44):15575-82. doi: 10.1021/bi9811314.
10
Purification and characterization of a flavoprotein involved in the degradation of epoxyalkanes by Xanthobacter Py2.黄杆菌Py2中参与环氧烷烃降解的一种黄素蛋白的纯化与特性分析
Eur J Biochem. 1998 Oct 1;257(1):160-8. doi: 10.1046/j.1432-1327.1998.2570160.x.

C-S 键断裂、CO 固定黄素酶的反应形式。

The reactive form of a C-S bond-cleaving, CO-fixing flavoenzyme.

机构信息

From the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400 and.

the Institute of Biological Chemistry, Washington State University, Pullman, Washington 99163.

出版信息

J Biol Chem. 2019 Mar 29;294(13):5137-5145. doi: 10.1074/jbc.RA118.005554. Epub 2019 Jan 29.

DOI:10.1074/jbc.RA118.005554
PMID:30696768
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6442062/
Abstract

2-ketopropyl-coenzyme M oxidoreductase/carboxylase (2-KPCC) is a bacterial disulfide oxidoreductase (DSOR) that, uniquely in this family, catalyzes CO fixation. 2-KPCC differs from other DSORs by having a phenylalanine that replaces a conserved histidine, which in typical DSORs is essential for stabilizing the reduced, reactive form of the active site. Here, using site-directed mutagenesis and stopped-flow kinetics, we examined the reactive form of 2-KPCC and its single turnover reactions with a suicide substrate and CO The reductive half-reaction of 2-KPCC was kinetically and spectroscopically similar to that of a typical DSOR, GSH reductase, in which the active-site histidine had been replaced with an alanine. However, the reduced, reactive form of 2-KPCC was distinct from those typical DSORs. In the absence of the histidine, the flavin and disulfide moieties were no longer coupled via a covalent or charge transfer interaction as in typical DSORs. Similar to thioredoxins, the p between 7.5 and 8.1 that controls reactivity appeared to be due to a single proton shared between the cysteines of the dithiol, which effectively stabilizes the attacking cysteine sulfide and renders it capable of breaking the strong C-S bond of the substrate. The lack of a histidine protected 2-KPCC's reactive intermediate from unwanted protonation; however, without its input as a catalytic acid-base, the oxidative half-reaction where carboxylation takes place was remarkably slow, limiting the overall reaction rate. We conclude that stringent regulation of protons in the DSOR active site supports C-S bond cleavage and selectivity for CO fixation.

摘要

2-酮丙酰辅酶 M 氧化还原酶/羧化酶(2-KPCC)是一种细菌二硫键氧化还原酶(DSOR),在该家族中具有独特的特性,可催化 CO 固定。2-KPCC 与其他 DSOR 不同之处在于其具有苯丙氨酸取代了保守的组氨酸,而在典型的 DSOR 中,组氨酸对于稳定活性位点的还原、反应形式是必不可少的。在这里,我们使用定点突变和停流动力学技术,研究了 2-KPCC 的反应形式及其与自杀底物和 CO 的单轮反应。2-KPCC 的还原半反应在动力学和光谱上与典型的 DSOR,即 GSH 还原酶相似,其中活性位点的组氨酸已被丙氨酸取代。然而,2-KPCC 的还原、反应形式与典型的 DSOR 不同。在没有组氨酸的情况下,黄素和二硫键部分不再像在典型的 DSOR 中那样通过共价或电荷转移相互作用偶联。类似于硫氧还蛋白,控制反应性的 p 值在 7.5 到 8.1 之间,似乎是由于二硫键的半胱氨酸之间共享一个质子,这有效地稳定了攻击的半胱氨酸硫醇,使其能够打破底物的强 C-S 键。缺乏组氨酸保护 2-KPCC 的反应性中间产物免受不必要的质子化;然而,由于没有其作为催化酸碱的投入,发生羧化的氧化半反应非常缓慢,限制了整体反应速率。我们得出的结论是,DSOR 活性位点中质子的严格调节支持 C-S 键的断裂和 CO 固定的选择性。