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黄杆菌Py2中参与环氧烷烃降解的一种黄素蛋白的纯化与特性分析

Purification and characterization of a flavoprotein involved in the degradation of epoxyalkanes by Xanthobacter Py2.

作者信息

Westphal A H, Swaving J, Jacobs L, De Kok A

机构信息

Department of Biomolecular Sciences, Wageningen Agricultural University, The Netherlands.

出版信息

Eur J Biochem. 1998 Oct 1;257(1):160-8. doi: 10.1046/j.1432-1327.1998.2570160.x.

DOI:10.1046/j.1432-1327.1998.2570160.x
PMID:9799115
Abstract

Recently a newly discovered pyridine nucleotide-disulfide oxidoreductase was reported to be essential for the degradation of epoxyalkanes by the Xanthobacter Py2 [Swaving, J., De Bont, J. A. M., Westphal, A. & De Kok, A. (1996) J. Bacteriol. 178, 6644-6646]. The disulfide oxidoreductase has now been purified from propene-grown Xanthobacter Py2. This enzyme (component II) is a NADPH-dependent FAD-containing homodimeric protein. The physiological substrate for this enzyme is unknown. The enzyme was active with the following dithiol substrates in decreasing order: 1,3-propanedithiol, reduced lipoamide and dithiothreitol, and inactive with glutathione and monothiols. In the reversed direction, only activity with 5,5'-dithiobis(2-nitrobenzoate) could be measured. Compared with other disulfide reductases it has a high activity with 5,5'-dithiobis(2-nitrobenzoate) and a low diaphorase and oxidase activity. Steady-state kinetic studies at pH 8.5 with 1,3-propanedithiol show that the enzyme operates by a ternary complex mechanism in the direction of NADP+ reduction. Anaerobic incubation of the enzyme with 1,3-propanedithiol resulted in slow reduction of the enzyme to yield the thiolate-FAD charge-transfer complex, the rate depending on the pH. At pH 7, where reduction was not detectable within 2 h, rapid mixing of NADP+ with the enzyme-propanedithiol mixture resulted in the formation of a complex between the reduced enzyme and NADP+ within the dead time of the instrument (5.6 ms). This is followed by slow formation of NADPH, concomitant with the appearance of the flavin C(4a)-thiol adduct, as judged from the spectral changes. This suggests that the rate-limiting step is the transfer of a hydride ion from the half-reduced enzyme to NADP+. Stopped-flow experiments involving reduction by NADPH show a biphasic behavior. The rapid formation (k(obs) = 40 s(-1)) of a transient intermediate with little absorption decrease at 460 nm and long wavelength absorption was followed by the slow formation (k(obs) = 4 s(-1)) of a species characterized as the thiolate-FAD charge-transfer complex with bound NADP+. Some formation of the FAD C(4a)-thiol adduct was also observed. Photoreduction in the presence of deazaflavin results in rapid bleaching at 450 nm, followed by the slow formation of a stable semiquinone. Full reduction could not be achieved, either by photoreduction or with NADPH, and was incomplete even with dithionite or NADPH in the presence of arsenite. The results indicate a low redox potential of the FAD and a slow rate of electron transfer from the pyridine nucleotide to the redox active disulfide and vice versa. From a sequence alignment with other disulfide reductases, it appears that the active site His-Glu diad is absent in this enzyme. The kinetic and spectral features described above will be discussed in this context.

摘要

最近有报道称,一种新发现的吡啶核苷酸 - 二硫化物氧化还原酶对于黄杆菌属Py2降解环氧烷烃至关重要[斯瓦英,J.,德邦特,J. A. M.,韦斯特法尔,A. & 德科克,A.(1996年)《细菌学杂志》178卷,6644 - 6646页]。现在已从以丙烯为生长底物的黄杆菌属Py2中纯化出这种二硫化物氧化还原酶。这种酶(组分II)是一种依赖NADPH的含FAD的同二聚体蛋白。该酶的生理底物尚不清楚。该酶对以下二硫醇底物有活性,活性由高到低依次为:1,3 - 丙二硫醇、还原型硫辛酰胺和二硫苏糖醇,对谷胱甘肽和单硫醇无活性。在逆向反应中,仅能检测到对5,5'-二硫代双(2 - 硝基苯甲酸)的活性。与其他二硫化物还原酶相比,它对5,5'-二硫代双(2 - 硝基苯甲酸)具有高活性,而双氢酶和氧化酶活性较低。在pH 8.5条件下用1,3 - 丙二硫醇进行的稳态动力学研究表明,该酶在NADP⁺还原方向上通过三元复合物机制起作用。该酶与1,3 - 丙二硫醇进行厌氧孵育会导致酶缓慢还原,生成硫醇盐 - FAD电荷转移复合物,其速率取决于pH值。在pH 7时,2小时内未检测到还原反应,将NADP⁺与酶 - 丙二硫醇混合物快速混合,在仪器的死时间(5.6毫秒)内,还原型酶与NADP⁺之间形成了复合物。随后缓慢形成NADPH,同时伴随着黄素C(4a) - 硫醇加合物的出现,这可从光谱变化判断出来。这表明限速步骤是氢离子从半还原酶转移到NADP⁺。涉及NADPH还原的停流实验显示出双相行为。首先快速形成(k(obs)=40 s⁻¹)一个在460纳米处吸收减少很少且有长波长吸收的瞬态中间体,随后缓慢形成(k(obs)=4 s⁻¹)一个被表征为与结合NADP⁺的硫醇盐 - FAD电荷转移复合物的物种。还观察到了一些FAD C(4a) - 硫醇加合物的形成。在脱氮黄素存在下的光还原导致450纳米处快速褪色,随后缓慢形成稳定的半醌。无论是通过光还原还是用NADPH都无法实现完全还原,即使在亚砷酸盐存在下用连二亚硫酸盐或NADPH也不完全。结果表明FAD的氧化还原电位较低,并且从吡啶核苷酸到氧化还原活性二硫化物以及反之的电子转移速率较慢。从与其他二硫化物还原酶的序列比对来看,该酶似乎不存在活性位点His - Glu二元组。将在这一背景下讨论上述动力学和光谱特征。

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