CERMICS, École des Ponts ParisTech, 6-8 Avenue Blaise Pascal, 77455, Marne-la-Vallée, France.
J Comput Chem. 2019 Apr 30;40(11):1198-1208. doi: 10.1002/jcc.25778. Epub 2019 Jan 29.
We apply the adaptive multilevel splitting (AMS) method to the C → C transition of alanine dipeptide in vacuum. Some properties of the algorithm are numerically illustrated, such as the unbiasedness of the probability estimator and the robustness of the method with respect to the reaction coordinate. We also calculate the transition time obtained via the probability estimator, using an appropriate ensemble of initial conditions. Finally, we show how the AMS method can be used to compute an approximation of the committor function. © 2019 Wiley Periodicals, Inc.
我们将自适应多层次分裂 (AMS) 方法应用于真空条件下丙氨酸二肽的 C → C 转变。数值说明了算法的一些性质,例如概率估计器的无偏性和方法对反应坐标的稳健性。我们还使用适当的初始条件集合计算了通过概率估计器获得的转变时间。最后,我们展示了如何使用 AMS 方法计算配分函数的近似值。© 2019 年 Wiley 期刊出版公司