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心血管生物学中非编码RNA的进化模式

Evolutionary Patterns of Non-Coding RNA in Cardiovascular Biology.

作者信息

Gandhi Shrey, Ruehle Frank, Stoll Monika

机构信息

Institute of Human Genetics, Department of Genetic Epidemiology, University of Münster, 48149 Münster, Germany.

Genetic Epidemiology and Statistical Genetics, Department of Biochemistry, CARIM School for Cardiovascular Diseases, 6200 MD Maastricht, The Netherlands.

出版信息

Noncoding RNA. 2019 Jan 31;5(1):15. doi: 10.3390/ncrna5010015.

Abstract

Cardiovascular diseases (CVDs) affect the heart and the vascular system with a high prevalence and place a huge burden on society as well as the healthcare system. These complex diseases are often the result of multiple genetic and environmental risk factors and pose a great challenge to understanding their etiology and consequences. With the advent of next generation sequencing, many non-coding RNA transcripts, especially long non-coding RNAs (lncRNAs), have been linked to the pathogenesis of CVD. Despite increasing evidence, the proper functional characterization of most of these molecules is still lacking. The exploration of conservation of sequences across related species has been used to functionally annotate protein coding genes. In contrast, the rapid evolutionary turnover and weak sequence conservation of lncRNAs make it difficult to characterize functional homologs for these sequences. Recent studies have tried to explore other dimensions of interspecies conservation to elucidate the functional role of these novel transcripts. In this review, we summarize various methodologies adopted to explore the evolutionary conservation of cardiovascular non-coding RNAs at sequence, secondary structure, syntenic, and expression level.

摘要

心血管疾病(CVDs)在人群中具有较高的患病率,会影响心脏和血管系统,给社会以及医疗保健系统带来巨大负担。这些复杂的疾病通常是多种遗传和环境风险因素共同作用的结果,对理解其病因和后果构成了巨大挑战。随着下一代测序技术的出现,许多非编码RNA转录本,尤其是长链非编码RNA(lncRNAs),已被发现与心血管疾病的发病机制有关。尽管证据越来越多,但对这些分子中大多数的功能特性仍缺乏恰当的描述。对相关物种间序列保守性的探索已被用于对蛋白质编码基因进行功能注释。相比之下,lncRNAs快速的进化更替和较弱的序列保守性使得难以对这些序列的功能同源物进行特性描述。最近的研究试图探索种间保守性的其他维度,以阐明这些新型转录本的功能作用。在这篇综述中,我们总结了为探索心血管非编码RNA在序列、二级结构、同线性和表达水平上的进化保守性而采用的各种方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/526a/6468844/5e411d61610e/ncrna-05-00015-g001.jpg

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