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生境假单胞菌 XWY-1 降解基因分析。

Genome Analysis of Carbaryl-Degrading Strain Pseudomonas putida XWY-1.

机构信息

Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China.

Laboratory Center of Life Sciences, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China.

出版信息

Curr Microbiol. 2019 Aug;76(8):927-929. doi: 10.1007/s00284-019-01637-4. Epub 2019 Feb 1.

DOI:10.1007/s00284-019-01637-4
PMID:30710152
Abstract

Carbaryl was a widely used pesticide in the agriculture industry. The toxicity against non-target organisms and the environmental pollution it caused became the focus of public concern. However, the microbial mechanism of carbaryl degradation was not fully investigated. In the study, we reported the complete genome of the carbaryl-degrading Pseudomonas putida strain XWY-1, which consists of a chromosome (5.9 Mbp) and a plasmid (0.4 Mbp). The carbaryl degradation genes are located on the plasmid. The study on the genome will facilitate to further elucidate the carbaryl degradation and advance the potential biotechnological applications of P. putida strain XWY-1.

摘要

西维因是农业领域广泛使用的一种杀虫剂。其对非靶标生物的毒性和造成的环境污染成为公众关注的焦点。然而,西维因的微生物降解机制尚未得到充分研究。在本研究中,我们报道了一株能够降解西维因的恶臭假单胞菌(Pseudomonas putida)菌株 XWY-1 的全基因组序列,该菌株的基因组由一条染色体(5.9 Mbp)和一条质粒(0.4 Mbp)组成。西维因降解基因位于质粒上。对该基因组的研究将有助于进一步阐明西维因的降解机制,并推进恶臭假单胞菌 XWY-1 的潜在生物技术应用。

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1
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J Hazard Mater. 2018 Feb 15;344:1126-1135. doi: 10.1016/j.jhazmat.2017.12.006. Epub 2017 Dec 5.
2
Insights into functional and evolutionary analysis of carbaryl metabolic pathway from Pseudomonas sp. strain C5pp.从假单胞菌 C5pp 中洞察到杀虫剂代谢途径的功能和进化分析。
Sci Rep. 2016 Dec 7;6:38430. doi: 10.1038/srep38430.
3
Draft Genome Sequence of Carbaryl-Degrading Soil Isolate Pseudomonas sp. Strain C5pp.
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Appl Microbiol Biotechnol. 2022 Sep;106(18):5973-5986. doi: 10.1007/s00253-022-12141-4. Epub 2022 Sep 5.
4
The Novel Amidase PcnH Initiates the Degradation of Phenazine-1-Carboxamide in Sphingomonas histidinilytica DS-9.新型酰胺酶 PcnH 启动鞘氨醇单胞菌 DS-9 中吩嗪-1-羧酰胺的降解。
Appl Environ Microbiol. 2022 Jun 14;88(11):e0054322. doi: 10.1128/aem.00543-22. Epub 2022 May 17.
5
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Folia Microbiol (Praha). 2022 Aug;67(4):591-604. doi: 10.1007/s12223-022-00966-5. Epub 2022 Mar 22.
6
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7
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8
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Front Bioeng Biotechnol. 2021 Mar 9;9:602445. doi: 10.3389/fbioe.2021.602445. eCollection 2021.
9
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10
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Genes (Basel). 2019 Jul 27;10(8):569. doi: 10.3390/genes10080569.
可降解西维因的土壤分离菌株假单胞菌属菌株C5pp的基因组序列草图
Genome Announc. 2016 Jun 9;4(3):e00526-16. doi: 10.1128/genomeA.00526-16.
4
PacBio Sequencing and Its Applications.PacBio测序技术及其应用。
Genomics Proteomics Bioinformatics. 2015 Oct;13(5):278-89. doi: 10.1016/j.gpb.2015.08.002. Epub 2015 Nov 2.
5
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.深入了解Illumina MiSeq平台进行扩增子测序时的偏差和测序错误。
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6
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Arch Microbiol. 2013 Aug;195(8):521-35. doi: 10.1007/s00203-013-0903-9. Epub 2013 Jun 2.
7
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8
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9
The RAST Server: rapid annotations using subsystems technology.RAST服务器:使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
10
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