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茶树采后叶片基因表达研究中内参基因的验证

Validation of reference genes for gene expression studies in post-harvest leaves of tea plant ().

作者信息

Zhou Zi-Wei, Deng Hui-Li, Wu Qing-Yang, Liu Bin-Bin, Yue Chuan, Deng Ting-Ting, Lai Zhong-Xiong, Sun Yun

机构信息

Key Laboratory of Tea Science in Fujian Province, College of Horticulture Fujian Agriculture and Forestry University, Fuzhou, P. R. China.

Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, P. R. China.

出版信息

PeerJ. 2019 Jan 31;7:e6385. doi: 10.7717/peerj.6385. eCollection 2019.

Abstract

Tea is one of three major non-alcoholic beverages that are popular all around the world. The economic value of tea product largely depends on the post-harvest physiology of tea leaves. The utilization of quantitative reverse transcription polymerase chain reaction is a widely accepted and precise approach to determine the target gene expression of tea plants, and the reliability of results hinges on the selection of suitable reference genes. A few reliable reference genes have been documented using various treatments and different tissues of tea plants, but none has been done on post-harvest leaves during the tea manufacturing process. The present study selected and analyzed 15 candidate reference genes: , , , , , , , , , , , , , , . This study made an assessment on the expression stability under two kinds of post-harvest treatment, turn over and withering, using three algorithms-GeNorm, Normfinder, and Bestkeeper. The results indicated that the three commonly used reference genes, , , , together with , were the most unstable genes in both the turn over and withering treatments. , , , and were the top four reference genes in the turn over treatment, while , , , , and were the five best reference genes in the withering group. The expression level of lipoxygenase genes, which were involved in a number of diverse aspects of plant physiology, including wounding, was evaluated to validate the findings. To conclude, we found a basis for the selection of reference genes for accurate transcription normalization in post-harvest leaves of tea plants.

摘要

茶是世界上广受欢迎的三大非酒精饮料之一。茶产品的经济价值在很大程度上取决于茶叶的采后生理学。定量逆转录聚合酶链反应的应用是一种广泛接受且精确的方法,用于确定茶树目标基因的表达,而结果的可靠性取决于合适内参基因的选择。已经有一些关于使用茶树不同处理和不同组织的可靠内参基因的报道,但在茶叶加工过程中的采后叶片方面尚未开展此类研究。本研究选择并分析了15个候选内参基因: , , , , , , , , , , , , , 。本研究使用三种算法——GeNorm、Normfinder和Bestkeeper,对两种采后处理(摊青和萎凋)下的表达稳定性进行了评估。结果表明,三个常用内参基因 , , 以及 ,在摊青和萎凋处理中都是最不稳定的基因。 , , , 和 是摊青处理中的前四个内参基因,而 , , , , 和 是萎凋组中的五个最佳内参基因。对参与植物生理学多个不同方面(包括创伤)的脂氧合酶基因的表达水平进行了评估,以验证研究结果。总之,我们为茶树采后叶片中准确转录归一化的内参基因选择找到了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0686/6360078/e0ff0a511ee0/peerj-07-6385-g001.jpg

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