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迈向对植物病害预测系统的可靠评估:以小麦赤霉病为例的案例研究

Toward a Reliable Evaluation of Forecasting Systems for Plant Diseases: A Case Study Using Fusarium Head Blight of Wheat.

作者信息

Landschoot S, Waegeman W, Audenaert K, Vandepitte J, Haesaert G, De Baets B

机构信息

KERMIT, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, BE-9000 Gent, Belgium, and Faculty of Applied Bioscience Engineering, University College Ghent, Valentin Vaerwyckweg 1, BE-9000 Gent, Belgium.

KERMIT, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University.

出版信息

Plant Dis. 2012 Jun;96(6):889-896. doi: 10.1094/PDIS-08-11-0665.

Abstract

Despite great efforts to forecast plant diseases, many of the existing systems often fall short in providing farmers with accurate predictions. One of the main problems arises from the existence of year and location effects, so that more advanced procedures are required for evaluating existing systems in an unbiased manner. This paper illustrates the case of Fusarium head blight of winter wheat in Belgium. We present a new cross-validation strategy that enables the evaluation of the predictive performance of a forecasting system for years and locations that are different from the years and locations on which the forecast was developed. Four different cross-validation strategies and five regression techniques are used. The results demonstrated that traditional evaluation strategies are too optimistic in their predictions, whereas the cross-year cross-location validation strategy yielded more realistic outcomes. Using this procedure, the mean squared error increased and the coefficient of determination decreased in predicting disease severity and deoxynivalenol content, suggesting that existing evaluation strategies may generate a substantial optimistic bias. The strongest discrepancies between the cross-validation strategies were observed for multiple linear regression models.

摘要

尽管在预测植物病害方面付出了巨大努力,但许多现有系统在为农民提供准确预测方面往往存在不足。主要问题之一源于年份和地点效应的存在,因此需要更先进的程序来以无偏的方式评估现有系统。本文阐述了比利时冬小麦赤霉病的案例。我们提出了一种新的交叉验证策略,该策略能够评估预测系统对与开发预测所依据的年份和地点不同的年份和地点的预测性能。使用了四种不同的交叉验证策略和五种回归技术。结果表明,传统评估策略在预测中过于乐观,而跨年份跨地点验证策略产生了更现实的结果。使用此程序,在预测病害严重程度和脱氧雪腐镰刀菌烯醇含量时,均方误差增加,决定系数降低,这表明现有评估策略可能会产生相当大的乐观偏差。在多元线性回归模型中,交叉验证策略之间的差异最为明显。

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