从秘鲁临床病例中分离出的莱什曼原虫（维阿尼亚种）兰氏亚种216 - 34株的基因组序列初稿
First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.
作者信息
Lin Wuling, Batra Dhwani, Narayanan Vidhya, Rowe Lori A, Sheth Mili, Zheng Yueli, Juieng Phalasy, Loparev Vladimir, de Almeida Marcos
机构信息
Reference Diagnostic Laboratory, Parasitic Diseases Branch/Department of Parasitic Diseases and Malaria, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
IHRC, Inc., Atlanta, Georgia, USA.
出版信息
Microbiol Resour Announc. 2019 Feb 7;8(6). doi: 10.1128/MRA.01524-18. eCollection 2019 Feb.
Abstract
We present here the first draft genome sequence of Leishmania (Viannia) lainsoni strain 216-34, sequenced using PacBio and MiSeq platforms. PacBio contigs were generated from assemblies using CANU version 1.6 and polished using Illumina reads.
摘要
我们在此展示利什曼原虫（维阿尼亚种）兰氏利什曼原虫216 - 34株的基因组序列初稿，该序列使用PacBio和MiSeq平台进行测序。PacBio重叠群通过使用CANU 1.6版本进行组装生成，并使用Illumina reads进行抛光处理。
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本文引用的文献
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2
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3
Diagnosis and Treatment of Leishmaniasis: Clinical Practice Guidelines by the Infectious Diseases Society of America (IDSA) and the American Society of Tropical Medicine and Hygiene (ASTMH).利什曼病的诊断与治疗：美国传染病学会（IDSA）和美国热带医学与卫生学会（ASTMH）发布的临床实践指南
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4
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