使用长读长组装的法属圭亚那（）菌株204 - 365的基因组序列草图
Draft Genome Sequence of French Guiana () Strain 204-365, Assembled Using Long Reads.
作者信息
Batra Dhwani, Lin Wuling, Rowe Lori A, Sheth Mili, Zheng Yueli, Loparev Vladimir, de Almeida Marcos
机构信息
Biotechnology Core Facility, DSR/NCEZID, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Reference Diagnostic Laboratory-PDB/DPDM, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
出版信息
Microbiol Resour Announc. 2018 Dec 13;7(23). doi: 10.1128/MRA.01421-18. eCollection 2018 Dec.
Abstract
We present here the draft genome sequence for Leishmania (Viannia) guyanensis. The isolate was obtained from a clinical case of cutaneous leishmaniasis in French Guiana. Genomic DNA was sequenced using PacBio and MiSeq platforms.
摘要
我们在此展示圭亚那利什曼原虫（维阿尼亚亚属）的基因组序列草图。该分离株取自法属圭亚那的一例皮肤利什曼病临床病例。使用PacBio和MiSeq平台对基因组DNA进行了测序。
相似文献
1
Draft Genome Sequence of French Guiana () Strain 204-365, Assembled Using Long Reads.使用长读长组装的法属圭亚那（）菌株204 - 365的基因组序列草图
Microbiol Resour Announc. 2018 Dec 13;7(23). doi: 10.1128/MRA.01421-18. eCollection 2018 Dec.
2
and reference genomes highlight genome structure and gene evolution in the subgenus.参考基因组揭示了该亚属的基因组结构和基因进化。
R Soc Open Sci. 2018 Apr 25;5(4):172212. doi: 10.1098/rsos.172212. eCollection 2018 Apr.
3
First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.从秘鲁临床病例中分离出的莱什曼原虫（维阿尼亚种）兰氏亚种216 - 34株的基因组序列初稿
Microbiol Resour Announc. 2019 Feb 7;8(6). doi: 10.1128/MRA.01524-18. eCollection 2019 Feb.
4
Reproductive strategies and population structure in Leishmania: substantial amount of sex in Leishmania Viannia guyanensis.利什曼原虫的生殖策略和种群结构：在圭亚那利什曼原虫中存在大量的有性生殖。
Mol Ecol. 2011 Aug;20(15):3116-27. doi: 10.1111/j.1365-294X.2011.05162.x. Epub 2011 Jul 1.
5
Use of the intramuscular route to administer pentamidine isethionate in Leishmania guyanensis cutaneous leishmaniasis increases the risk of treatment failure.在圭亚那皮肤利什曼病中，使用肌肉内途径给予戊烷脒伊索酸盐会增加治疗失败的风险。
Travel Med Infect Dis. 2018 Jul-Aug;24:31-36. doi: 10.1016/j.tmaid.2018.02.010. Epub 2018 Mar 1.
6
Molecular epidemiology of Leishmania (Viannia) guyanensis in French Guiana.法属圭亚那地区圭亚那利什曼原虫（维扬尼利什曼原虫）的分子流行病学
J Clin Microbiol. 2006 Feb;44(2):468-73. doi: 10.1128/JCM.44.2.468-473.2006.
7
Leishmania spp. identification by polymerase chain reaction-restriction fragment length polymorphism analysis and its applications in French Guiana.聚合酶链反应-限制性片段长度多态性分析鉴定利什曼原虫及其在法属圭亚那的应用。
Diagn Microbiol Infect Dis. 2010 Feb;66(2):175-80. doi: 10.1016/j.diagmicrobio.2009.08.013. Epub 2009 Sep 25.
8
First clinical case of cutaneous leishmaniasis due to Leishmania (Viannia) braziliensis in a domestic cat from French Guiana.法属圭亚那首例由巴西利什曼原虫（Viannia）引起的皮肤利什曼病的临床病例。
Vet Parasitol. 2011 Sep 27;181(2-4):325-8. doi: 10.1016/j.vetpar.2011.04.028. Epub 2011 Apr 21.
9
Molecular Evidence of and in Red Howler Monkey () from French Guiana.法属圭亚那红吼猴中 和 的分子证据。
Vector Borne Zoonotic Dis. 2019 Dec;19(12):896-900. doi: 10.1089/vbz.2019.2459. Epub 2019 Jul 17.
10
Unraveling the genetic diversity and phylogeny of Leishmania RNA virus 1 strains of infected Leishmania isolates circulating in French Guiana.解析法属圭亚那流行的感染利什曼原虫分离株中利什曼原虫RNA病毒1株的遗传多样性和系统发育。
PLoS Negl Trop Dis. 2017 Jul 17;11(7):e0005764. doi: 10.1371/journal.pntd.0005764. eCollection 2017 Jul.
引用本文的文献
1
Leishmania guyanensis M4147 as a new LRV1-bearing model parasite: Phosphatidate phosphatase 2-like protein controls cell cycle progression and intracellular lipid content.圭亚那利什曼原虫 M4147 作为一种新的携带 LRV1 的模型寄生虫：磷酸酶 2 样蛋白控制细胞周期进程和细胞内脂质含量。
PLoS Negl Trop Dis. 2022 Jun 24;16(6):e0010510. doi: 10.1371/journal.pntd.0010510. eCollection 2022 Jun.
2
Genomics of Trypanosomatidae: Where We Stand and What Needs to Be Done?锥虫科基因组学：我们目前的状况以及需要做些什么？
Pathogens. 2021 Sep 2;10(9):1124. doi: 10.3390/pathogens10091124.
3
Chromosome-Level Genome Sequence of () Strain CDC216-162, Isolated from an Afghanistan Clinical Case.从阿富汗临床病例中分离出的（）菌株CDC216 - 162的染色体水平基因组序列 。 （注：原文括号处信息缺失）
Microbiol Resour Announc. 2021 May 20;10(20):e00842-20. doi: 10.1128/MRA.00842-20.
4
Leishmania tarentolae: Taxonomic classification and its application as a promising biotechnological expression host.原虫内变形虫属：分类学分类及其作为有前途的生物技术表达宿主的应用。
PLoS Negl Trop Dis. 2019 Jul 25;13(7):e0007424. doi: 10.1371/journal.pntd.0007424. eCollection 2019 Jul.
本文引用的文献
1
and reference genomes highlight genome structure and gene evolution in the subgenus.参考基因组揭示了该亚属的基因组结构和基因进化。
R Soc Open Sci. 2018 Apr 25;5(4):172212. doi: 10.1098/rsos.172212. eCollection 2018 Apr.
2
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
3
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
4
Diagnosis and Treatment of Leishmaniasis: Clinical Practice Guidelines by the Infectious Diseases Society of America (IDSA) and the American Society of Tropical Medicine and Hygiene (ASTMH).利什曼病的诊断与治疗：美国传染病学会（IDSA）和美国热带医学与卫生学会（ASTMH）发布的临床实践指南
Am J Trop Med Hyg. 2017 Jan 11;96(1):24-45. doi: 10.4269/ajtmh.16-84256. Epub 2016 Dec 7.
5
Detection and Differentiation of Leishmania spp. in Clinical Specimens by Use of a SYBR Green-Based Real-Time PCR Assay.使用基于SYBR Green的实时荧光定量PCR检测和区分临床标本中的利什曼原虫属。
J Clin Microbiol. 2016 Dec 28;55(1):281-290. doi: 10.1128/JCM.01764-16. Print 2017 Jan.
6
Cutaneous and mucocutaneous leishmaniasis: Clinical perspectives.皮肤和黏膜利什曼病：临床视角。
J Am Acad Dermatol. 2015 Dec;73(6):897-908; quiz 909-10. doi: 10.1016/j.jaad.2014.08.051.
7
Cutaneous leishmaniasis: recent developments in diagnosis and management.皮肤利什曼病：诊断与管理的最新进展
Am J Clin Dermatol. 2015 Apr;16(2):99-109. doi: 10.1007/s40257-015-0114-z.
8
Muco-cutaneous leishmaniasis in the New World: the ultimate subversion.新世界的黏膜皮肤利什曼病：终极颠覆。
Virulence. 2011 Nov-Dec;2(6):547-52. doi: 10.4161/viru.2.6.17839. Epub 2011 Nov 1.
9
Identification of Leishmania spp. by molecular amplification and DNA sequencing analysis of a fragment of rRNA internal transcribed spacer 2.通过 rRNA 内部转录间隔区 2 片段的分子扩增和 DNA 测序分析鉴定利什曼原虫种属。
J Clin Microbiol. 2011 Sep;49(9):3143-9. doi: 10.1128/JCM.01177-11. Epub 2011 Jul 13.
10
Mucocutaneous Leishmaniasis: clinical markers in presumptive diagnosis.黏膜皮肤利什曼病：疑似诊断中的临床标志物。
Braz J Otorhinolaryngol. 2011 Jun;77(3):380-4. doi: 10.1590/s1808-86942011000300018.
Zotero 插件