Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India.
Database (Oxford). 2019 Jan 1;2019:baz012. doi: 10.1093/database/baz012.
Immunosuppression proved as a captivating therapy in several autoimmune disorders, asthma as well as in organ transplantation. Immunosuppressive peptides are specific for reducing efficacy of immune system with wide range of therapeutic implementations. `ImmunoSPdb' is a comprehensive, manually curated database of around 500 experimentally verified immunosuppressive peptides compiled from 79 research article and 32 patents. The current version comprises of 553 entries providing extensive information including peptide name, sequence, chirality, chemical modification, origin, nature of peptide, its target as well as mechanism of action, amino acid frequency and composition, etc. Data analysis revealed that most of the immunosuppressive peptides are linear (91%), are shorter in length i.e. up to 20 amino acids (62%) and have L form of amino acids (81%). About 30% peptide are either chemically modified or have end terminal modification. Most of the peptides either are derived from proteins (41%) or naturally (27%) exist. Blockage of potassium ion channel (24%) is one a major target for immunosuppressive peptides. In addition, we have annotated tertiary structure by using PEPstrMOD and I-TASSER. Many user-friendly, web-based tools have been integrated to facilitate searching, browsing and analyzing the data. We have developed a user-friendly responsive website to assist a wide range of users.
免疫抑制被证明是多种自身免疫性疾病、哮喘以及器官移植的一种有吸引力的治疗方法。免疫抑制肽是专门用于降低免疫系统效力的,具有广泛的治疗应用。ImmunoSPdb
是一个全面的、人工编辑的数据库,其中包含了约 500 种经过实验验证的免疫抑制肽,这些肽来源于 79 篇研究文章和 32 项专利。当前版本包含 553 条条目,提供了广泛的信息,包括肽名称、序列、手性、化学修饰、来源、肽的性质、其靶标以及作用机制、氨基酸频率和组成等。数据分析表明,大多数免疫抑制肽是线性的(91%),长度较短,即不超过 20 个氨基酸(62%),并且具有 L 型氨基酸(81%)。约 30%的肽要么经过化学修饰,要么有末端修饰。大多数肽要么来自蛋白质(41%),要么天然存在(27%)。阻断钾离子通道(24%)是免疫抑制肽的主要靶标之一。此外,我们还使用 PEPstrMOD 和 I-TASSER 对三级结构进行了注释。我们集成了许多用户友好的网络工具,以方便搜索、浏览和分析数据。我们开发了一个用户友好的响应式网站,以帮助广泛的用户。