Bock C H, Parker P E, Cook A Z, Riley T, Gottwald T R
University of Florida/USDA, 2001 S. Rock Rd., Ft. Pierce, FL 34945.
USDA-APHIS-PPQ, Moore Air Base, Edinburg, TX 78539.
Plant Dis. 2009 Apr;93(4):412-424. doi: 10.1094/PDIS-93-4-0412.
Citrus canker (Xanthomonas citri subsp. citri) is destructive in many citrus production regions in tropical and subtropical parts of the world. Assessment of canker symptoms is required for diverse reasons, including monitoring epidemics, evaluating the efficacy of control strategies, and disease response in breeding material. The objectives were to compare the ability of experienced and inexperienced raters at assessing citrus canker, to identify factors that affect the quality of the assessment, to determine common sources of error, and to discern how error is related to actual disease magnitude. Two-hundred digital leaf images (0 to 37% area infected) were assessed once by 28 raters, five of whom were experienced plant pathologists (PPs), and 23 who had no experience in disease severity assessment (NPPs). True disease (lesion number [LN], % necrotic area [%N], and % chlorotic+necrotic area [%CN]) was measured using image analysis on a leaf-by-leaf basis, and each parameter was estimated by the 28 raters. LN was neither severely over- nor underestimated, while %N was greatly overestimated, with a lesser tendency to overestimate %CN over the true severity range of these two symptom types. A linear relationship existed between estimate of the disease and true disease for all measures of severity. Data were heteroscedastic and error was not constant with increasing true disease. Agreement between rater estimates and true disease was measured with Lin's concordance correlation coefficient (ρ). LN showed greatest agreement (ρ = 0.88 to 0.99), followed by %CN (ρ = 0.80 to 0.95) and %N (ρ = 0.19 to 0.84). Greater lesion number resulted in overestimation of area infected for both %N and %CN. Overestimation was particularly noticeable at low disease severities. There was a linear relationship between log variance and log true disease for LN (r = 0.71), %N (r = 0.85), and %CN (r = 0.88), and raters tended to estimate disease above 10% to the nearest 5 or 10%. GLM analysis showed differences between PP and NPP groups in assessing disease. For LN, precision of assessment for both groups was similar (r > 0.92 and 0.94, respectively), but for estimates of %N and %CN, the PPs were more precise (%N and %CN, r = 0.61 and 0.73, respectively) compared to NPPs (%N and %CN, r = 0.45 and 0.58, respectively). Absolute error for mean LN was low. The absolute error of %N and %CN showed overestimation to approximately 8% area infected. Above 8%, absolute error increased, but comprised both over- and underestimation. For %N and %CN, relative error was almost exclusively positive and dramatic at severity <8% (up to approximately 600%), but at severity >10% it was relatively small. Error in rater estimates of canker severity is ubiquitous. Understanding these sources of error will aid in the development of both appropriate training and relevant rating aids.
柑橘溃疡病(柑橘黄龙病菌柑橘亚种)在世界热带和亚热带地区的许多柑橘产区具有破坏性。出于多种原因需要对溃疡病症状进行评估,包括监测疫情、评估防控策略的效果以及育种材料中的病害反应。研究目的是比较有经验和无经验的评估者评估柑橘溃疡病的能力,识别影响评估质量的因素,确定常见误差来源,并了解误差与实际病害严重程度的关系。28名评估者对200张数字叶片图像(感染面积为0至37%)进行了一次评估,其中5名是经验丰富的植物病理学家(PPs),23名没有病害严重程度评估经验(NPPs)。通过对每片叶子进行图像分析来测量真实病害(病斑数量[LN]、坏死面积百分比[%N]和褪绿+坏死面积百分比[%CN]),并由这28名评估者对每个参数进行估计。LN既没有被严重高估也没有被低估,而%N被大大高估,在这两种症状类型的真实严重程度范围内,高估%CN的趋势较小。对于所有严重程度的测量,病害估计值与真实病害之间存在线性关系。数据具有异方差性,并且误差并不随着真实病害的增加而恒定。评估者估计值与真实病害之间的一致性用林氏一致性相关系数(ρ)来衡量。LN显示出最大的一致性(ρ = 0.88至0.99),其次是%CN(ρ = 0.80至0.95)和%N(ρ = 0.19至0.84)。病斑数量增加导致%N和%CN的感染面积估计值被高估。在低病害严重程度时,高估尤为明显。LN(r = 0.71)、%N(r = 0.85)和%CN(r = 0.88)的对数方差与对数真实病害之间存在线性关系,并且评估者倾向于将病害估计为高于10%,最接近5%或10%。广义线性模型分析显示PP组和NPP组在评估病害方面存在差异。对于LN,两组的评估精度相似(分别为r > 0.92和0.94),但对于%N和%CN的估计,与NPPs(%N和%CN的r分别为0.45和0.58)相比,PPs更精确(%N和%CN的r分别为0.61和0.73)。平均LN的绝对误差较低。%N和%CN的绝对误差显示高估至感染面积约8%。超过8%时,绝对误差增加,但包括高估和低估。对于%N和%CN,相对误差几乎完全为正,并且在严重程度<8%时很大(高达约600%),但在严重程度>10%时相对较小。评估者对溃疡病严重程度的估计误差普遍存在。了解这些误差来源将有助于制定适当的培训和相关评级辅助工具。