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基于计算研究的酮咯酸结构、生化性质及其降解产物的优化。

Optimization of structures, biochemical properties of ketorolac and its degradation products based on computational studies.

机构信息

Department of Chemistry, University of Chittagong, Chittagong, 4331, Bangladesh.

Department of Applied Chemistry and Biochemical Engineering, Shizuoka University, 3-5-1, Johoku, Hamamatsu, 432-8011, Japan.

出版信息

Daru. 2019 Jun;27(1):71-82. doi: 10.1007/s40199-019-00243-w. Epub 2019 Feb 19.

Abstract

BACKGROUND

Ketorolac (KTR) is used as an analgesic drug with an efficacy close to that of the opioid family. It is mainly used for the short term treatment of post-operative pain. It can inhibit the prostaglandin synthesis by blocking cyclooxygenase (COX).

METHODS

In this investigation, the inherent stability and biochemical interaction of Ketorolac (KTR) and its degradation products have been studiedon the basis of quantum mechanical approaches. Density functional theory (DFT) with B3LYP/ 6-31G (d) has been employed to optimize the structures. Thermodynamic properties, frontier molecular orbital features, dipole moment, electrostatic potential, equilibrium geometry, vibrational frequencies and atomic partial charges of these optimized structureswere investigated. Molecular docking has been performed against prostaglandin H2 (PGH2) synthase protein 5F19 to search the binding affinity and mode(s). ADMET prediction has performed to evaluate the absorption, metabolism and carcinogenic properties.

RESULTS

The equilibrium geometry calculations support the optimized structures. Thermodynamic results disclosed the thermal stability of all structures. From molecular orbital data, all the degradents are chemically more reactive than parent drug (except K3). However, the substitution of carboxymethyl radicalin K4 improved the physicochemical properties and binding affinity. ADMET calculations predict the improved pharmacokinetic and non-carcinogenic properties of all degradents.

CONCLUSION

Based on physicochemical, molecular docking, and ADMET calculation, this study can be helpful to understand the biochemical activities of Ketorolac and its degradents and to design a potent analgesic drug.

摘要

背景

酮咯酸(KTR)是一种与阿片类药物疗效相近的镇痛药物。它主要用于短期治疗术后疼痛。它可以通过阻断环氧化酶(COX)来抑制前列腺素的合成。

方法

在这项研究中,基于量子力学方法研究了酮咯酸(KTR)及其降解产物的固有稳定性和生化相互作用。采用密度泛函理论(DFT)与 B3LYP/6-31G(d)对结构进行优化。研究了这些优化结构的热力学性质、前沿分子轨道特征、偶极矩、静电势、平衡几何、振动频率和原子部分电荷。对前列腺素 H2(PGH2)合酶蛋白 5F19 进行分子对接,以搜索结合亲和力和模式。进行 ADMET 预测以评估吸收、代谢和致癌性质。

结果

平衡几何计算支持优化结构。热力学结果表明所有结构都具有热稳定性。从分子轨道数据来看,所有降解物的化学活性都比母体药物(除 K3 外)更高。然而,在 K4 中引入羧甲基自由基改善了理化性质和结合亲和力。ADMET 计算预测所有降解物的药代动力学和非致癌性质得到改善。

结论

基于理化性质、分子对接和 ADMET 计算,本研究有助于了解酮咯酸及其降解物的生化活性,并设计出一种有效的镇痛药物。

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