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深入了解 B3 转录因子超家族和烟草打顶后腋芽基因的表达谱(.)。

Insight into the B3Transcription Factor Superfamily and Expression Profiling of Genes in Axillary Buds after Topping in Tobacco(.).

机构信息

Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.

Key Laboratory for Tobacco Gene Resources, State Tobacco Monopoly Administration, Qingdao 266101, China.

出版信息

Genes (Basel). 2019 Feb 20;10(2):164. doi: 10.3390/genes10020164.

DOI:10.3390/genes10020164
PMID:30791672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6409620/
Abstract

Members of the plant-specific B3 transcription factor superfamily play important roles in various growth and developmental processes in plants. Even though there are many valuable studies on genes in other species, little is known about the B3 superfamily in tobacco. We identified 114 B3 proteins from tobacco using comparative genome analysis. These proteins were classified into four subfamilies based on their phylogenetic relationships, and include the ARF, RAV, LAV, and REM subfamilies. The chromosomal locations, gene structures, conserved protein motifs, and sub-cellular localizations of the tobacco B3 proteins were analyzed. The patterns of exon-intron numbers and arrangement and the protein structures of the tobacco B3 proteins were in general agreement with their phylogenetic relationships. The expression patterns of 114 genes revealed that many genes show tissue-specific expression. The expression levels of genes in axillary buds after topping showed that the genes are mainly up-regulated in response to topping, while the genes are down-regulated after topping.

摘要

植物特有的 B3 转录因子超家族成员在植物的各种生长和发育过程中发挥重要作用。尽管其他物种的基因有许多有价值的研究，但对烟草中的 B3 超家族知之甚少。我们使用比较基因组分析从烟草中鉴定出 114 种 B3 蛋白。这些蛋白根据其系统发育关系分为四个亚家族，包括 ARF、RAV、LAV 和 REM 亚家族。分析了烟草 B3 蛋白的染色体位置、基因结构、保守蛋白基序和亚细胞定位。烟草 B3 蛋白的外显子-内含子数量和排列模式以及蛋白结构总体上与其系统发育关系一致。114 个基因的表达模式表明，许多基因表现出组织特异性表达。打顶后腋芽中基因的表达水平表明，基因主要在打顶后上调，而基因在打顶后下调。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/bd7cca0ff011/genes-10-00164-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/da5c5a394255/genes-10-00164-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/a9b3e5accaf3/genes-10-00164-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/8884c5d66e34/genes-10-00164-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/9214f90e0852/genes-10-00164-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/ce74e4276694/genes-10-00164-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/1cbdfedef020/genes-10-00164-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/cee9d0e0e3af/genes-10-00164-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/1d58256b3454/genes-10-00164-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/9fed31c3fd5f/genes-10-00164-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/bd7cca0ff011/genes-10-00164-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/da5c5a394255/genes-10-00164-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/a9b3e5accaf3/genes-10-00164-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/8884c5d66e34/genes-10-00164-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/9214f90e0852/genes-10-00164-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/ce74e4276694/genes-10-00164-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/1cbdfedef020/genes-10-00164-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/cee9d0e0e3af/genes-10-00164-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/1d58256b3454/genes-10-00164-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/9fed31c3fd5f/genes-10-00164-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d278/6409620/bd7cca0ff011/genes-10-00164-g010.jpg

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