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DNA 上细菌复制解旋酶加载的物理基础。

Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.

机构信息

Department of Structural & Chemical Biology, Centro de Investigaciones Biológicas, CIB-CSIC 28040 Madrid, Spain.

Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

出版信息

Mol Cell. 2019 Apr 4;74(1):173-184.e4. doi: 10.1016/j.molcel.2019.01.023. Epub 2019 Feb 20.

Abstract

In cells, dedicated AAA+ ATPases deposit hexameric, ring-shaped helicases onto DNA to initiate chromosomal replication. To better understand the mechanisms by which helicase loading can occur, we used cryo-EM to determine sub-4-Å-resolution structures of the E. coli DnaB⋅DnaC helicase⋅loader complex with nucleotide in pre- and post-DNA engagement states. In the absence of DNA, six DnaC protomers latch onto and crack open a DnaB hexamer using an extended N-terminal domain, stabilizing this conformation through nucleotide-dependent ATPase interactions. Upon binding DNA, DnaC hydrolyzes ATP, allowing DnaB to isomerize into a topologically closed, pre-translocation state competent to bind primase. Our data show how DnaC opens the DnaB ring and represses the helicase prior to DNA binding and how DnaC ATPase activity is reciprocally regulated by DnaB and DNA. Comparative analyses reveal how the helicase loading mechanism of DnaC parallels and diverges from homologous AAA+ systems involved in DNA replication and transposition.

摘要

在细胞中,专门的 AAA+ ATPase 将六聚体、环形解旋酶沉积到 DNA 上,以启动染色体复制。为了更好地理解解旋酶加载的机制,我们使用 cryo-EM 技术确定了带有核苷酸的大肠杆菌 DnaB⋅DnaC 解旋酶加载复合物在 DNA 结合前后的亚 4Å 分辨率结构。在没有 DNA 的情况下,六个 DnaC 原聚体使用延伸的 N 端结构域钩住并打开 DnaB 六聚体,通过核苷酸依赖性 ATPase 相互作用稳定这种构象。结合 DNA 后,DnaC 水解 ATP,使 DnaB 异构化为拓扑封闭的预迁移状态,能够与引物酶结合。我们的数据显示了 DnaC 如何在 DNA 结合之前打开 DnaB 环并抑制解旋酶,以及 DnaC ATPase 活性如何被 DnaB 和 DNA 相互调节。比较分析揭示了 DnaC 的解旋酶加载机制如何与涉及 DNA 复制和转位的同源 AAA+ 系统相似和不同。

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本文引用的文献

1
Structure of the origin recognition complex bound to DNA replication origin.
Nature. 2018 Jul;559(7713):217-222. doi: 10.1038/s41586-018-0293-x. Epub 2018 Jul 4.
2
Conformational control and DNA-binding mechanism of the metazoan origin recognition complex.
Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):E5906-E5915. doi: 10.1073/pnas.1806315115. Epub 2018 Jun 13.
3
The ring-shaped hexameric helicases that function at DNA replication forks.
Nat Struct Mol Biol. 2018 Feb;25(2):122-130. doi: 10.1038/s41594-018-0024-x. Epub 2018 Jan 29.
4
Cdt1 stabilizes an open MCM ring for helicase loading.
Nat Commun. 2017 Jun 23;8:15720. doi: 10.1038/ncomms15720.
5
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Nat Methods. 2017 Apr;14(4):331-332. doi: 10.1038/nmeth.4193. Epub 2017 Feb 27.
6
Mechanisms for initiating cellular DNA replication.
Science. 2017 Feb 24;355(6327). doi: 10.1126/science.aah6317. Epub 2017 Feb 16.
7
Open-ringed structure of the Cdt1-Mcm2-7 complex as a precursor of the MCM double hexamer.
Nat Struct Mol Biol. 2017 Mar;24(3):300-308. doi: 10.1038/nsmb.3374. Epub 2017 Feb 13.
8
Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1.
Nat Struct Mol Biol. 2017 Mar;24(3):316-324. doi: 10.1038/nsmb.3372. Epub 2017 Feb 13.
9
Bacterial and Eukaryotic Replisome Machines.
JSM Biochem Mol Biol. 2016;3(1). Epub 2016 May 30.
10
Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7691-E7700. doi: 10.1073/pnas.1616745113. Epub 2016 Nov 16.

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