Department of Structural & Chemical Biology, Centro de Investigaciones Biológicas, CIB-CSIC 28040 Madrid, Spain.
Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Mol Cell. 2019 Apr 4;74(1):173-184.e4. doi: 10.1016/j.molcel.2019.01.023. Epub 2019 Feb 20.
In cells, dedicated AAA+ ATPases deposit hexameric, ring-shaped helicases onto DNA to initiate chromosomal replication. To better understand the mechanisms by which helicase loading can occur, we used cryo-EM to determine sub-4-Å-resolution structures of the E. coli DnaB⋅DnaC helicase⋅loader complex with nucleotide in pre- and post-DNA engagement states. In the absence of DNA, six DnaC protomers latch onto and crack open a DnaB hexamer using an extended N-terminal domain, stabilizing this conformation through nucleotide-dependent ATPase interactions. Upon binding DNA, DnaC hydrolyzes ATP, allowing DnaB to isomerize into a topologically closed, pre-translocation state competent to bind primase. Our data show how DnaC opens the DnaB ring and represses the helicase prior to DNA binding and how DnaC ATPase activity is reciprocally regulated by DnaB and DNA. Comparative analyses reveal how the helicase loading mechanism of DnaC parallels and diverges from homologous AAA+ systems involved in DNA replication and transposition.
在细胞中,专门的 AAA+ ATPase 将六聚体、环形解旋酶沉积到 DNA 上,以启动染色体复制。为了更好地理解解旋酶加载的机制,我们使用 cryo-EM 技术确定了带有核苷酸的大肠杆菌 DnaB⋅DnaC 解旋酶加载复合物在 DNA 结合前后的亚 4Å 分辨率结构。在没有 DNA 的情况下,六个 DnaC 原聚体使用延伸的 N 端结构域钩住并打开 DnaB 六聚体,通过核苷酸依赖性 ATPase 相互作用稳定这种构象。结合 DNA 后,DnaC 水解 ATP,使 DnaB 异构化为拓扑封闭的预迁移状态,能够与引物酶结合。我们的数据显示了 DnaC 如何在 DNA 结合之前打开 DnaB 环并抑制解旋酶,以及 DnaC ATPase 活性如何被 DnaB 和 DNA 相互调节。比较分析揭示了 DnaC 的解旋酶加载机制如何与涉及 DNA 复制和转位的同源 AAA+ 系统相似和不同。