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三种紧密相关的1-[(1,3-苯并二氧杂环戊烯-5-基)甲基]-4-(卤代苯甲酰基)哌嗪:相似的分子结构但不同的分子间相互作用。

Three closely related 1-[(1,3-benzodioxol-5-yl)methyl]-4-(halobenzo-yl)piperazines: similar mol-ecular structures but different inter-molecular inter-actions.

作者信息

Mahesha Ninganayaka, Sagar Belakavadi K, Yathirajan Hemmige S, Furuya Tetsundo, Haraguchi Tomoyuki, Akitsu Takashiro, Glidewell Christopher

机构信息

Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru-570 006, India.

Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan.

出版信息

Acta Crystallogr E Crystallogr Commun. 2019 Jan 11;75(Pt 2):202-207. doi: 10.1107/S2056989019000458. eCollection 2019 Feb 1.

DOI:10.1107/S2056989019000458
PMID:30800451
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6362650/
Abstract

In each of the compounds 1-[(1,3-benzodioxol-5-yl)methyl]-4-(3-fluoro-benzo-yl)piperazine, CHFNO (I), 1-[(1,3-benzodioxol-5-yl)methyl]-4-(2,6-di-fluoro-benzo-yl)piperazine, CHFNO (II), and 1-[(1,3-benzodioxol-5-yl)methyl]-4-(2,4-di-chloro-benzo-yl)piperazine, CHClNO (III), the piperazine rings adopt a chair conformation with the (1,3-benzodioxol-5-yl)methyl substituent occupying an equatorial site: the five-membered rings are all slightly folded across the O⋯O line leading to envelope conformations. The dihedral angle between the planar amidic fragment and the haloaryl ring is 62.97 (5)° in (I) but 77.72 (12)° and 75.50 (5)° in (II) and (III), respectively. Despite their similarity in constitution and conformation, the supra-molecular inter-actions in (I)-(III) differ: in (I), a combination of C-H⋯O and C-H⋯π(arene) hydrogen bonds links the mol-ecules into a three-dimensional framework structure, but there are no hydrogen bonds of any sort in either (II) or (III), although the structure of (III) contains a short Cl⋯Cl contact between inversion-related pairs of mol-ecules.

摘要

在化合物1-[(1,3-苯并二氧杂环戊烯-5-基)甲基]-4-(3-氟苯甲酰基)哌嗪(CHFNO,I)、1-[(1,3-苯并二氧杂环戊烯-5-基)甲基]-4-(2,6-二氟苯甲酰基)哌嗪(CHFNO,II)和1-[(1,3-苯并二氧杂环戊烯-5-基)甲基]-氯苯甲酰基)哌嗪(CHClNO,III)中,哌嗪环均呈椅式构象,(1,3-苯并二氧杂环戊烯-5-基)甲基取代基占据赤道位置:五元环均沿O⋯O线略有折叠,形成信封式构象。在(I)中,平面酰胺片段与卤代芳基环之间的二面角为62.97 (5)°,而在(II)和(III)中分别为77.72 (12)°和75.50 (5)°。尽管它们在结构和构象上相似,但(I)-(III)中的超分子相互作用不同:在(I)中,C-H⋯O和C-H⋯π(芳烃)氢键的组合将分子连接成三维骨架结构,但在(II)或(III)中均不存在任何类型 的氢键,尽管(III)的结构在分子的反演相关对之间包含短的Cl⋯Cl接触。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/0032f9ec5037/e-75-00202-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/6186d3ae9ada/e-75-00202-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/5c1d7b612b09/e-75-00202-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/8924c59fb55a/e-75-00202-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/581158ac1d43/e-75-00202-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/8a456d632aa5/e-75-00202-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/0032f9ec5037/e-75-00202-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/6186d3ae9ada/e-75-00202-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/5c1d7b612b09/e-75-00202-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/8924c59fb55a/e-75-00202-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/581158ac1d43/e-75-00202-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/8a456d632aa5/e-75-00202-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a3/6362650/0032f9ec5037/e-75-00202-fig6.jpg

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