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利用生物网络分析重金属胁迫期间的bHLH编码基因。

Analysis of bHLH coding genes of during heavy metal stress using biological network.

作者信息

Yadav Birendra Singh, Mani Ashutosh

机构信息

Department of Biotechnology, Motilal Nehru National Institute of Technology, Allahabad, 211004 India.

出版信息

Physiol Mol Biol Plants. 2019 Jan;25(1):113-121. doi: 10.1007/s12298-018-0625-1. Epub 2018 Nov 30.

Abstract

bHLH family of transcription factors play important role in regulating many cellular and physiological functions in plants. These proteins are also known to be involved in response to several abiotic stress types. is an important source of protein in food across the globe. Considerable differential expression in the bHLH family of proteins during heavy metal exposure in was observed by microarray data analysis. The study aimed to construct a Pearson coefficient correlation based network of bHLH coding genes in the plant. Microarray data of recorded under cadmium and chromium stress (GSE86807) from GEO at NCBI was used for analysis. The network constructed from expression data set of the 85 bHLH coding genes revealed 10 hub genes that are connected with topological genes. These hub genes are stress responsive genes that may also be regarded as the marker genes for heavy metal response. Our analysis reported a new set of reference genes (hub genes) that have potentially significant role in development of stress tolerant crops.

摘要

bHLH转录因子家族在调节植物的许多细胞和生理功能中发挥着重要作用。这些蛋白质也已知参与对几种非生物胁迫类型的响应。 是全球食物中蛋白质的重要来源。通过微阵列数据分析观察到,在 重金属暴露期间bHLH蛋白质家族中存在相当大的差异表达。该研究旨在构建基于植物中bHLH编码基因的皮尔逊系数相关性网络。使用来自NCBI的GEO中镉和铬胁迫(GSE86807)下记录的 的微阵列数据进行分析。由85个bHLH编码基因的表达数据集构建的网络揭示了10个与拓扑基因相连的枢纽基因。这些枢纽基因是应激反应基因,也可被视为重金属反应的标记基因。我们的分析报告了一组新的参考基因(枢纽基因),它们在耐胁迫作物的发育中可能具有重要作用。

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