Sato Yoshiharu, Matoba Ryo, Kato Kikuya
DNA Chip Research Inc.
Laboratory of Medical Genomics in Nara Institute of Science and Technology.
Biol Pharm Bull. 2019;42(3):337-342. doi: 10.1248/bpb.b18-00804.
Liquid biopsy is a minimally invasive test for cancer genetic status based on circulating tumor DNA (ctDNA), circulating tumor cells, or other tumor-derived materials in blood plasma. Although the minimal invasiveness and time resolution are attractive features of liquid biopsy, the limited amount of ctDNA in plasma poses problems. Recent developments in digital PCR and next-generation sequencing (NGS)-based technology have improved the accuracy of liquid biopsy. In particular, molecular barcoding technology in NGS-based methods, i.e., tagging of molecular barcodes to cell-free DNA before amplification, reduces technical errors by validating the consensus of sequences originating from a single molecule, leading to marked improvement of the accuracy and detection limit. However, substitutions caused by DNA damage and somatic mutations originating from normal cells are still obstacles to the sensitive detection of mutations on ctDNA. Since there have been only a few clinical applications, a deeper understanding of ctDNA biology and more advanced analytical technology are needed for the practical application of liquid biopsy.
液体活检是一种基于循环肿瘤DNA(ctDNA)、循环肿瘤细胞或血浆中其他肿瘤衍生物质的癌症基因状态微创检测方法。尽管液体活检具有微创性和时间分辨率等吸引人的特点,但血浆中ctDNA含量有限也带来了问题。基于数字PCR和下一代测序(NGS)技术的最新进展提高了液体活检的准确性。特别是基于NGS方法中的分子条形码技术,即在扩增前对游离DNA标记分子条形码,通过验证源自单个分子的序列一致性来减少技术误差,从而显著提高了准确性和检测限。然而,由DNA损伤引起的替换以及源自正常细胞的体细胞突变仍然是ctDNA上突变灵敏检测的障碍。由于临床应用较少,液体活检的实际应用需要对ctDNA生物学有更深入的了解以及更先进的分析技术。