CSIR-Institute of Microbial Technology, Sector 39 A, Chandigarh, India.
Glycobiology. 2019 Jun 1;29(6):461-468. doi: 10.1093/glycob/cwz013.
Knowledge of glycosylation status and glycan-pattern of proteins are of considerable medical, academic and application interest. ProGlycProt V2.0 (www.proglycprot.org) therefore, is conceived and maintained as an exclusive web-resource providing comprehensive information on experimentally validated glycoproteins and protein glycosyltransferases (GTs) of prokaryotic origin. The second release of ProGlycProt features a major update with a 191% increase in the total number of entries, manually collected and curated from 607 peer-reviewed publications, on the subject. Protein GTs from prokaryotes that catalyze a varied range of glycan linkages are amenable glycoengineering tools. Therefore, the second release presents content that is greatly expanded and reorganized in two sub-databases: ProGPdb and ProGTdb. While ProGPdb provides information about validated glycoproteins (222 entries), ProGTdb catalogs enzymes/proteins that are instrumental in protein glycosylation, directly (122) or as accessory proteins (182). ProGlycProt V2.0 remains highly cross-referenced yet exclusive and complementary in content to other related databases. The second release further features enhanced search capability, a "compare" entries option and an innovative geoanalytical tool (MapView) facilitating location-assisted search-cum filtering of the entries using geo-positioning information of researchers/groups cited in the ProGlycProt V2.0 databases. Thus, ProGlycProt V2.0 continues to serve as a useful one-point web-resource on various evidence-based information on protein glycosylation in prokaryotes.
糖基化状态和蛋白质聚糖模式的知识具有相当大的医学、学术和应用意义。因此,ProGlycProt V2.0 被构想和维护为一个专门的网络资源,提供关于实验验证的糖蛋白和原核起源的蛋白质糖基转移酶(GT)的综合信息。ProGlycProt 的第二个版本进行了重大更新,其总条目数增加了 191%,这些条目是从 607 篇同行评议的出版物中手动收集和整理的。原核生物中催化各种糖键连接的蛋白质 GT 是可进行糖基工程改造的工具。因此,第二个版本在两个子数据库中呈现了内容的极大扩展和重新组织:ProGPdb 和 ProGTdb。虽然 ProGPdb 提供了关于已验证糖蛋白的信息(222 条条目),但 ProGTdb 则编目了在蛋白质糖基化中起直接作用的酶/蛋白质(122 条)或作为辅助蛋白(182 条)。ProGlycProt V2.0 仍然高度交叉引用,但在内容上与其他相关数据库是独特且互补的。第二个版本还具有增强的搜索功能、“比较”条目选项和一个创新的地理分析工具(MapView),该工具使用 ProGlycProt V2.0 数据库中引用的研究人员/小组的地理定位信息,方便了使用地理位置辅助搜索和过滤条目。因此,ProGlycProt V2.0 继续作为一个有用的单点网络资源,提供关于原核生物中蛋白质糖基化的各种基于证据的信息。