School of Life Sciences, Huzhou University, Huzhou, 313000, China.
Department of Pharmaceutical Sciences and Computational Chemical Genomics Screening Center, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
J Comput Aided Mol Des. 2019 Apr;33(4):447-459. doi: 10.1007/s10822-019-00194-z. Epub 2019 Mar 6.
Tetrahydroberberrubine (TU), an active tetrahydroprotoberberines (THPBs), is gaining increasing popularity as a potential candidate for treatment of anxiety and depression. One of its two enantiomers, l-TU, has been reported to be an antagonist of both D1 and D2 receptors, but the functional activity of the other enantiomer, d-TU, is still unknown. In this study, experiments were combined with in silico molecular simulations to (1) confirm and discover the functional activities of l-TU and d-TU, and (2) systematically evaluate the molecular mechanisms beyond the experimental observations. l-TU proved to be an antagonist of both D1 and D2 receptors (IC = 385 nM and 985 nM, respectively), while d-TU shows no affinity against either D1 or D2 receptor, based on the cAMP assay (D1 receptor) and calcium flux assay (D2 receptor). Results from both flexible-ligand docking studies and molecular dynamic (MD) simulations provided insights at the atomic level. The l-TU-bound structures predicted by MD (1) undergo an outward rotation of the extracellular helical bundles; (2) have an enlarged orthosteric binding pocket; and (3) have a central toggle switch that is prevented from rotating freely. These features are unique to the l-TU enantiomer and provide an explanation for its antagonistic behavior toward both D1 and D2 receptors. The present study provides new sight on the structural and functional relationships of l-TU and d-TU binding to dopamine receptors, and provides guidance to the rational design of novel molecules targeting these two dopamine receptors in the future.
四氢小檗红碱(TU)是一种具有生物活性的四氢原小檗碱(THPBs),作为治疗焦虑和抑郁的潜在候选药物,正受到越来越多的关注。其两种对映异构体之一,l-TU,已被报道为 D1 和 D2 受体的拮抗剂,但另一种对映异构体,d-TU 的功能活性仍不清楚。在这项研究中,实验与计算机分子模拟相结合,(1)证实并发现了 l-TU 和 d-TU 的功能活性,(2)系统地评估了实验观察之外的分子机制。基于 cAMP 测定法(D1 受体)和钙通量测定法(D2 受体),l-TU 被证明是 D1 和 D2 受体的拮抗剂(IC50 分别为 385 nM 和 985 nM),而 d-TU 对 D1 或 D2 受体均无亲和力。灵活配体对接研究和分子动力学(MD)模拟的结果提供了原子水平的见解。MD 预测的 l-TU 结合结构(1)经历了细胞外螺旋束的向外旋转;(2)具有扩大的正位结合口袋;(3)具有中央切换开关,阻止其自由旋转。这些特征是 l-TU 对映异构体所特有的,为其对 D1 和 D2 受体的拮抗作用提供了解释。本研究为 l-TU 和 d-TU 与多巴胺受体结合的结构和功能关系提供了新的视角,并为未来针对这两种多巴胺受体设计新型分子提供了指导。