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实验研究与整合计算模拟揭示四氢小檗红碱对多巴胺 D1/D2 受体的显著不同作用。

Significantly different effects of tetrahydroberberrubine enantiomers on dopamine D1/D2 receptors revealed by experimental study and integrated in silico simulation.

机构信息

School of Life Sciences, Huzhou University, Huzhou, 313000, China.

Department of Pharmaceutical Sciences and Computational Chemical Genomics Screening Center, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, 15261, USA.

出版信息

J Comput Aided Mol Des. 2019 Apr;33(4):447-459. doi: 10.1007/s10822-019-00194-z. Epub 2019 Mar 6.

Abstract

Tetrahydroberberrubine (TU), an active tetrahydroprotoberberines (THPBs), is gaining increasing popularity as a potential candidate for treatment of anxiety and depression. One of its two enantiomers, l-TU, has been reported to be an antagonist of both D1 and D2 receptors, but the functional activity of the other enantiomer, d-TU, is still unknown. In this study, experiments were combined with in silico molecular simulations to (1) confirm and discover the functional activities of l-TU and d-TU, and (2) systematically evaluate the molecular mechanisms beyond the experimental observations. l-TU proved to be an antagonist of both D1 and D2 receptors (IC = 385 nM and 985 nM, respectively), while d-TU shows no affinity against either D1 or D2 receptor, based on the cAMP assay (D1 receptor) and calcium flux assay (D2 receptor). Results from both flexible-ligand docking studies and molecular dynamic (MD) simulations provided insights at the atomic level. The l-TU-bound structures predicted by MD (1) undergo an outward rotation of the extracellular helical bundles; (2) have an enlarged orthosteric binding pocket; and (3) have a central toggle switch that is prevented from rotating freely. These features are unique to the l-TU enantiomer and provide an explanation for its antagonistic behavior toward both D1 and D2 receptors. The present study provides new sight on the structural and functional relationships of l-TU and d-TU binding to dopamine receptors, and provides guidance to the rational design of novel molecules targeting these two dopamine receptors in the future.

摘要

四氢小檗红碱(TU)是一种具有生物活性的四氢原小檗碱(THPBs),作为治疗焦虑和抑郁的潜在候选药物,正受到越来越多的关注。其两种对映异构体之一,l-TU,已被报道为 D1 和 D2 受体的拮抗剂,但另一种对映异构体,d-TU 的功能活性仍不清楚。在这项研究中,实验与计算机分子模拟相结合,(1)证实并发现了 l-TU 和 d-TU 的功能活性,(2)系统地评估了实验观察之外的分子机制。基于 cAMP 测定法(D1 受体)和钙通量测定法(D2 受体),l-TU 被证明是 D1 和 D2 受体的拮抗剂(IC50 分别为 385 nM 和 985 nM),而 d-TU 对 D1 或 D2 受体均无亲和力。灵活配体对接研究和分子动力学(MD)模拟的结果提供了原子水平的见解。MD 预测的 l-TU 结合结构(1)经历了细胞外螺旋束的向外旋转;(2)具有扩大的正位结合口袋;(3)具有中央切换开关,阻止其自由旋转。这些特征是 l-TU 对映异构体所特有的,为其对 D1 和 D2 受体的拮抗作用提供了解释。本研究为 l-TU 和 d-TU 与多巴胺受体结合的结构和功能关系提供了新的视角,并为未来针对这两种多巴胺受体设计新型分子提供了指导。

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