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大型胶原蛋白的克隆与诱变策略

Cloning and Mutagenesis Strategies for Large Collagens.

作者信息

Bornert Olivier, Nyström Alexander

机构信息

Department of Dermatology, Faculty of Medicine, Medical Center, University of Freiburg, Freiburg, Germany.

出版信息

Methods Mol Biol. 2019;1944:3-15. doi: 10.1007/978-1-4939-9095-5_1.

DOI:10.1007/978-1-4939-9095-5_1
PMID:30840231
Abstract

The size and relatively high GC content of cDNAs are challenges for efficient targeted engineering of large collagens. There are both basic biological and therapeutic interests in the ability to modify collagens, as this would allow for studies precisely describing interactions of collagens with specific interaction partners, addressing consequences of individual disease-causing mutations, and assessing therapeutic applicability of precision medicine approaches. Using collagen VII as an example, we will here describe a strategy for rapid and simple modification of cDNAs encoding large collagens. The method is flexible and can be used for the creation of point mutations, small or large deletions, and insertion of DNA.

摘要

互补DNA(cDNA)的大小和相对较高的鸟嘌呤-胞嘧啶(GC)含量对大型胶原蛋白的高效靶向工程而言是挑战。能够修饰胶原蛋白具有基础生物学和治疗学方面的意义,因为这将有助于开展研究,精确描述胶原蛋白与特定相互作用伙伴的相互作用,探究个体致病突变的后果,并评估精准医学方法的治疗适用性。以Ⅶ型胶原蛋白为例,我们在此将描述一种快速、简单地修饰编码大型胶原蛋白的cDNA的策略。该方法具有灵活性,可用于创建点突变、小的或大的缺失以及DNA插入。

相似文献

1
Cloning and Mutagenesis Strategies for Large Collagens.大型胶原蛋白的克隆与诱变策略
Methods Mol Biol. 2019;1944:3-15. doi: 10.1007/978-1-4939-9095-5_1.
2
Large Deletions Targeting the Triple-Helical Domain of Collagen VII Lead to Mild Acral Dominant Dystrophic Epidermolysis Bullosa.靶向VII型胶原蛋白三螺旋结构域的大片段缺失导致轻度肢端显性营养不良性大疱性表皮松解症。
J Invest Dermatol. 2018 Apr;138(4):987-991. doi: 10.1016/j.jid.2017.11.014. Epub 2017 Nov 24.
3
Targeted Exon Skipping Restores Type VII Collagen Expression and Anchoring Fibril Formation in an In Vivo RDEB Model.靶向外显子跳跃在体内隐性营养不良性大疱性表皮松解症模型中恢复VII型胶原蛋白表达和锚定原纤维形成。
J Invest Dermatol. 2016 Dec;136(12):2387-2395. doi: 10.1016/j.jid.2016.07.029. Epub 2016 Aug 3.
4
Analysis of the functional consequences of targeted exon deletion in COL7A1 reveals prospects for dystrophic epidermolysis bullosa therapy.对COL7A1中靶向外显子缺失的功能后果分析揭示了营养不良性大疱性表皮松解症治疗的前景。
Mol Ther. 2016 Aug;24(7):1302-11. doi: 10.1038/mt.2016.92. Epub 2016 May 9.
5
Targeted skipping of a single exon harboring a premature termination codon mutation: implications and potential for gene correction therapy for selective dystrophic epidermolysis bullosa patients.针对含有过早终止密码子突变的单个外显子的靶向跳跃:对选择性营养不良性大疱性表皮松解症患者基因矫正治疗的意义和潜力。
J Invest Dermatol. 2006 Dec;126(12):2614-20. doi: 10.1038/sj.jid.5700435. Epub 2006 Jun 15.
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Antisense-mediated exon skipping to reframe transcripts.反义介导的外显子跳跃以重新构建转录本。
Methods Mol Biol. 2012;867:221-38. doi: 10.1007/978-1-61779-767-5_15.
7
A type VII collagen subdomain mutant is thermolabile and shows enhanced proteolytic degradability - Implications for the pathogenesis of recessive dystrophic epidermolysis bullosa?VII 型胶原亚结构域突变体热不稳定且具有增强的蛋白水解降解性 - 对隐性营养不良型大疱性表皮松解症发病机制的影响?
Biochim Biophys Acta Mol Basis Dis. 2017 Jan;1863(1):52-59. doi: 10.1016/j.bbadis.2016.10.023. Epub 2016 Oct 28.
8
Gentamicin induces functional type VII collagen in recessive dystrophic epidermolysis bullosa patients.庆大霉素可诱导隐性营养不良型大疱性表皮松解症患者产生功能性VII型胶原蛋白。
J Clin Invest. 2017 Aug 1;127(8):3028-3038. doi: 10.1172/JCI92707. Epub 2017 Jul 10.
9
Mutation analysis and characterization of COL7A1 mutations in dystrophic epidermolysis bullosa.营养不良性大疱性表皮松解症中COL7A1突变的突变分析与特征描述
Exp Dermatol. 2008 Jul;17(7):553-68. doi: 10.1111/j.1600-0625.2008.00723.x.
10
A COL7A1 variant leading to in-frame skipping of exon 15 attenuates disease severity in recessive dystrophic epidermolysis bullosa.导致第15外显子框内跳跃的COL7A1变体可减轻隐性营养不良性大疱性表皮松解症的疾病严重程度。
Br J Dermatol. 2015 Nov;173(5):1308-11. doi: 10.1111/bjd.13945. Epub 2015 Aug 26.

引用本文的文献

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Somatic mutations in collagens are associated with a distinct tumor environment and overall survival in gastric cancer.胶原中的体细胞突变与胃癌中独特的肿瘤微环境和整体生存相关。
BMC Cancer. 2022 Feb 4;22(1):139. doi: 10.1186/s12885-021-09136-1.