Park Ingyu, Lee Kyeongho, Bishayee Kausik, Jeon Hong Jin, Lee Hyosang, Lee Unjoo
Department of Electrical Engineering, Hallym University, Chuncheon 24252, Korea.
Department of Brain and Cognitive Sciences, DGIST, Daegu 42988, Korea.
Exp Neurobiol. 2019 Feb;28(1):54-61. doi: 10.5607/en.2019.28.1.54. Epub 2019 Feb 11.
Scratching is a main behavioral response accompanied by acute and chronic itch conditions, and has been quantified as an objective correlate to assess itch in studies using laboratory animals. Scratching has been counted mostly by human annotators, which is a time-consuming and laborious process. It has been attempted to develop automated scoring methods using various strategies, but they often require specialized equipment, costly software, or implantation of device which may disturb animal behaviors. To complement limitations of those methods, we have adapted machine learning-based strategy to develop a novel automated and real-time method detecting mouse scratching from experimental movies captured using monochrome cameras such as a webcam. Scratching is identified by characteristic changes in pixels, body position, and body size by frame as well as the size of body. To build a training model, a novel two-step J48 decision tree-inducing algorithm along with a C4.5 post-pruning algorithm was applied to three 30-min video recordings in which a mouse exhibits scratching following an intradermal injection of a pruritogen, and the resultant frames were then used for the next round of training. The trained method exhibited, on average, a sensitivity and specificity of 95.19% and 92.96%, respectively, in a performance test with five new recordings. This result suggests that it can be used as a non-invasive, automated and objective tool to measure mouse scratching from video recordings captured in general experimental settings, permitting rapid and accurate analysis of scratching for preclinical studies and high throughput drug screening.
搔抓是急性和慢性瘙痒状态下伴随的主要行为反应,在使用实验动物的研究中,搔抓已被量化为评估瘙痒的客观相关指标。搔抓计数大多由人工标注完成,这是一个耗时费力的过程。人们尝试使用各种策略开发自动评分方法,但这些方法往往需要专门的设备、昂贵的软件或植入可能干扰动物行为的装置。为弥补这些方法的局限性,我们采用基于机器学习的策略,开发了一种新颖的自动实时方法,可从使用网络摄像头等单色相机拍摄的实验视频中检测小鼠的搔抓行为。通过逐帧分析像素、身体位置、身体大小以及身体尺寸的特征变化来识别搔抓行为。为构建训练模型,一种新颖的两步J48决策树诱导算法与C4.5后剪枝算法被应用于三段30分钟的视频记录,在这些视频中,小鼠在皮内注射致痒原后出现搔抓行为,然后将所得帧用于下一轮训练。在对五段新记录的性能测试中,训练后的方法平均灵敏度和特异性分别为95.19%和92.96%。这一结果表明,它可作为一种非侵入性、自动且客观的工具,用于从一般实验设置中拍摄的视频记录测量小鼠搔抓行为,从而允许对搔抓行为进行快速准确的分析,以用于临床前研究和高通量药物筛选。