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石蒜属(石蒜科:石蒜亚科)的完整叶绿体基因组。

The complete chloroplast genome of L. (Amaryllidaceae: Amaryllidoideae).

作者信息

Könyves Kálmán, Bilsborrow Jordan, David John, Culham Alastair

机构信息

Royal Horticultural Society Garden Wisley, Woking, United Kingdom.

Herbarium, School of Biological Sciences, University of Reading, Reading, United Kingdom.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 8;3(2):1137-1138. doi: 10.1080/23802359.2018.1521311. eCollection 2018.

DOI:10.1080/23802359.2018.1521311
PMID:30854464
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6390724/
Abstract

The first complete chloroplast genome sequence for is assembled and annotated in this study. The total length of the chloroplast genome is 160,099 bp and comprises the large single copy (LSC) spanning 86,445 bp, the small single copy (SSC) spanning 16,434 bp, and two inverted repeat regions each of 28,610 bp length. The truncated copy of before the junction between IR and SSC was 1277-2428 bp longer than in other included Asparagales samples. A potential pseudogene, , was also identified. This is the first reported plastome for Amaryllidaceae subfamily Amaryllidoideae.

摘要

本研究组装并注释了首个完整的[物种名称]叶绿体基因组序列。[物种名称]叶绿体基因组全长160,099 bp,包括一个86,445 bp的大单拷贝区(LSC)、一个16,434 bp的小单拷贝区(SSC)以及两个长度均为28,610 bp的反向重复区。在IR与SSC交界处之前的[物种名称]截短拷贝比其他纳入的天门冬目样本长1277 - 2428 bp。还鉴定出一个潜在的假基因[基因名称]。这是石蒜科石蒜亚科首个报道的质体基因组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/793a/7799725/09afbe89b7c8/TMDN_A_1521311_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/793a/7799725/09afbe89b7c8/TMDN_A_1521311_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/793a/7799725/09afbe89b7c8/TMDN_A_1521311_F0001_B.jpg

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本文引用的文献

1
IRscope: an online program to visualize the junction sites of chloroplast genomes.IRscope:一个可视化叶绿体基因组连接点的在线程序。
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2
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
3
Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes.Verdant:全叶绿体基因组的自动注释、比对和系统发育分析
石蒜科(Amaryllidaceae),来自中国东部的一个新物种,由形态学和分子证据揭示。
PhytoKeys. 2022 Sep 19;206:153-165. doi: 10.3897/phytokeys.206.90720. eCollection 2022.
4
Over 30 Years of Misidentification: A New Nothospecies × (Amaryllidaceae) in Eastern China, Based on Molecular, Morphological, and Karyotypic Evidence.30多年的误认:基于分子、形态和核型证据,中国东部发现一种新的杂种植物×(石蒜科)。
Plants (Basel). 2022 Jun 29;11(13):1730. doi: 10.3390/plants11131730.
5
Comparative Plastome Analysis of Three Amaryllidaceae Subfamilies: Insights into Variation of Genome Characteristics, Phylogeny, and Adaptive Evolution.三个石蒜科亚科的叶绿体基因组比较分析:对基因组特征变异、系统发育和适应性进化的见解
Biomed Res Int. 2022 Mar 24;2022:3909596. doi: 10.1155/2022/3909596. eCollection 2022.
6
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Saudi J Biol Sci. 2022 Jan;29(1):650-659. doi: 10.1016/j.sjbs.2021.10.035. Epub 2021 Oct 22.
7
Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the genes in Jacq.石蒜科的比较质体基因组学:反向重复序列扩增与水仙属植物基因的降解
PeerJ. 2021 Nov 12;9:e12400. doi: 10.7717/peerj.12400. eCollection 2021.
8
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9
Engaging the next generation of plant geneticists through sustained research: an overview of a post-16 project.通过持续研究吸引下一代植物遗传学家:一个 16 岁后项目概述。
Heredity (Edinb). 2020 Dec;125(6):431-436. doi: 10.1038/s41437-020-00370-0. Epub 2020 Sep 17.
10
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Genome Biol Evol. 2020 Jan 1;12(1):3684-3697. doi: 10.1093/gbe/evz229.
Bioinformatics. 2017 Jan 1;33(1):130-132. doi: 10.1093/bioinformatics/btw583. Epub 2016 Sep 14.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
6
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
7
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
8
Phylogeny of the Asparagales based on three plastid and two mitochondrial genes.基于三个质体基因和两个线粒体基因的天门冬目系统发育。
Am J Bot. 2012 May;99(5):875-89. doi: 10.3732/ajb.1100468. Epub 2012 Apr 26.