• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

欧洲最具标志性的植物之一——L. 的完整质体基因组序列。

Complete plastome sequence of L., one of the most iconic European plants.

作者信息

Adamo Martino, Fochi Valeria, Mucciarelli Marco

机构信息

Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.

出版信息

Mitochondrial DNA B Resour. 2024 Aug 22;9(8):1132-1136. doi: 10.1080/23802359.2024.2392758. eCollection 2024.

DOI:10.1080/23802359.2024.2392758
PMID:39183765
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11342812/
Abstract

L. is one of the most iconic plants of the European flora. It is a species of great horticultural interest, but also an endangered and protected plant in the wild as a consequence of loss of natural habitats. Complete plastid genome was assembled from next-generation sequencing data obtaining a circular genome of 160,008 bp long assembly. It comprises a pair of inverted repeat regions, a large single-copy region (108,400 bp), and a small single-copy region (16,434 bp). It encodes 131 genes, including 87 protein coding genes, 37 tRNA genes and seven rRNA genes. Phylogeny showed the strict relationship between and L. The complete plastome will provide a useful genetic resource for future conservation programmes, phylogenetic studies and horticultural applications.

摘要

L. 是欧洲植物区系中最具标志性的植物之一。它是一种具有重大园艺价值的物种,但由于自然栖息地的丧失,在野外也是一种濒危和受保护的植物。通过下一代测序数据组装了完整的质体基因组,获得了一个长度为160,008 bp的环状基因组组装体。它由一对反向重复区域、一个大单拷贝区域(108,400 bp)和一个小单拷贝区域(16,434 bp)组成。它编码131个基因,包括87个蛋白质编码基因、37个tRNA基因和7个rRNA基因。系统发育显示了 与L. 之间的紧密关系。完整的质体基因组将为未来的保护计划、系统发育研究和园艺应用提供有用的遗传资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/276a5323f8c5/TMDN_A_2392758_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/4cc407459623/TMDN_A_2392758_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/d9ce0d5b2446/TMDN_A_2392758_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/276a5323f8c5/TMDN_A_2392758_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/4cc407459623/TMDN_A_2392758_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/d9ce0d5b2446/TMDN_A_2392758_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d4/11342812/276a5323f8c5/TMDN_A_2392758_F0003_B.jpg

相似文献

1
Complete plastome sequence of L., one of the most iconic European plants.欧洲最具标志性的植物之一——L. 的完整质体基因组序列。
Mitochondrial DNA B Resour. 2024 Aug 22;9(8):1132-1136. doi: 10.1080/23802359.2024.2392758. eCollection 2024.
2
The complete chloroplast genome of L. (Amaryllidaceae: Amaryllidoideae).石蒜属(石蒜科:石蒜亚科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2018 Oct 8;3(2):1137-1138. doi: 10.1080/23802359.2018.1521311. eCollection 2018.
3
Complete plastome sequence of (L. f.) R. Br. (Apocynaceae).罗布麻(Apocynaceae)(L. f.)R. Br. 的完整质体基因组序列。
Mitochondrial DNA B Resour. 2020 Jan 17;5(1):522-523. doi: 10.1080/23802359.2019.1710596.
4
Complete chloroplast genome sequence of Barleria prionitis, comparative chloroplast genomics and phylogenetic relationships among Acanthoideae.巴特勒利亚·普里奥尼蒂斯的完整叶绿体基因组序列,Acanthoideae 中的叶绿体基因组比较和系统发育关系。
BMC Genomics. 2020 Jun 6;21(1):393. doi: 10.1186/s12864-020-06798-2.
5
Complete plastome sequence of linn. (Dilleniaceae): an Endangered (EN) species in South China.莲(莲科)的完整质体基因组序列:中国南方的一种濒危(EN)物种。
Mitochondrial DNA B Resour. 2018 Nov 25;4(1):55-56. doi: 10.1080/23802359.2018.1536454. eCollection 2019.
6
Comparative genomics of four Liliales families inferred from the complete chloroplast genome sequence of Veratrum patulum O. Loes. (Melanthiaceae).从白花藜芦(Melanthiaceae)的完整叶绿体基因组序列推断出的四个百合科家族的比较基因组学。
Gene. 2013 Nov 10;530(2):229-35. doi: 10.1016/j.gene.2013.07.100. Epub 2013 Aug 23.
7
Complete plastome sequence of (Styracaeae): An endangered (EN) plant species endemic to China.安息香科(Styracaeae)植物的完整质体基因组序列:一种中国特有的濒危(EN)植物物种。
Mitochondrial DNA B Resour. 2018 Oct 27;3(2):1031-1032. doi: 10.1080/23802359.2018.1511847.
8
Complete plastome sequence of Hance (Linderniaceae), an endemic herb in South China.中国南方特有草本植物母草(母草科)的完整质体基因组序列
Mitochondrial DNA B Resour. 2019 Jul 10;4(2):2092-2093. doi: 10.1080/23802359.2019.1618220.
9
Complete sequence of wild chloroplast genome.野生叶绿体基因组的完整序列。
Mitochondrial DNA B Resour. 2019 Oct 1;4(2):3295-3297. doi: 10.1080/23802359.2019.1673231.
10
Complete plastome sequence of Traill and Tsiang (Apocynaceae).Traill和蒋英(夹竹桃科)的完整质体基因组序列
Mitochondrial DNA B Resour. 2018 Oct 26;3(2):1176-1177. doi: 10.1080/23802359.2018.1524720.

本文引用的文献

1
CPGView: A package for visualizing detailed chloroplast genome structures.CPGView:一个用于可视化详细叶绿体基因组结构的软件包。
Mol Ecol Resour. 2023 Apr;23(3):694-704. doi: 10.1111/1755-0998.13729. Epub 2023 Jan 1.
2
The complete chloroplast genome sequence of Magic Lily ().文殊兰的完整叶绿体基因组序列()。 (原文括号部分内容缺失,译文按原样呈现)
Mitochondrial DNA B Resour. 2018 Oct 26;3(2):1210-1211. doi: 10.1080/23802359.2018.1527193.
3
Complete chloroplast genome sequences of four Allium species: comparative and phylogenetic analyses.
四种葱属植物完整叶绿体基因组序列:比较和系统发育分析。
Sci Rep. 2019 Aug 22;9(1):12250. doi: 10.1038/s41598-019-48708-x.
4
The complete chloroplast genome of L. (Amaryllidaceae: Amaryllidoideae).石蒜属(石蒜科:石蒜亚科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2018 Oct 8;3(2):1137-1138. doi: 10.1080/23802359.2018.1521311. eCollection 2018.
5
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
6
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
7
jModelTest 2: more models, new heuristics and parallel computing.jModelTest 2:更多模型、新启发式方法与并行计算。
Nat Methods. 2012 Jul 30;9(8):772. doi: 10.1038/nmeth.2109.
8
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.MrBayes 3.2:在大型模型空间中进行高效的贝叶斯系统发育推断和模型选择。
Syst Biol. 2012 May;61(3):539-42. doi: 10.1093/sysbio/sys029. Epub 2012 Feb 22.
9
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.从多序列比对中选择保守区域用于系统发育分析。
Mol Biol Evol. 2000 Apr;17(4):540-52. doi: 10.1093/oxfordjournals.molbev.a026334.