Suppr超能文献

肌联蛋白错义及非移码插入/缺失变异与扩张型心肌病的相关性。

Relevance of Titin Missense and Non-Frameshifting Insertions/Deletions Variants in Dilated Cardiomyopathy.

机构信息

Children's Hospital, Institute of Clinical Medicine, Helsinki University Central Hospital, University of Helsinki, Helsinki, Finland.

Institute of Biomedicine, University of Helsinki, Helsinki, Finland.

出版信息

Sci Rep. 2019 Mar 11;9(1):4093. doi: 10.1038/s41598-019-39911-x.

Abstract

Recent advancements in next generation sequencing (NGS) technology have led to the identification of the giant sarcomere gene, titin (TTN), as a major human disease gene. Truncating variants of TTN (TTNtv) especially in the A-band region account for 20% of dilated cardiomyopathy (DCM) cases. Much attention has been focused on assessment and interpretation of TTNtv in human disease; however, missense and non-frameshifting insertions/deletions (NFS-INDELs) are difficult to assess and interpret in clinical diagnostic workflow. Targeted sequencing covering all exons of TTN was performed on a cohort of 530 primary DCM patients from three cardiogenetic centres across Europe. Using stringent bioinformatic filtering, twenty-nine and two rare TTN missense and NFS-INDELs variants predicted deleterious were identified in 6.98% and 0.38% of DCM patients, respectively. However, when compared with those identified in the largest available reference population database, no significant enrichment of such variants was identified in DCM patients. Moreover, DCM patients and reference individuals had comparable frequencies of splice-region missense variants with predicted splicing alteration. DCM patients and reference populations had comparable frequencies of rare predicted deleterious TTN missense variants including splice-region missense variants suggesting that these variants are not independently causative for DCM. Hence, these variants should be classified as likely benign in the clinical diagnostic workflow, although a modifier effect cannot be excluded at this stage.

摘要

下一代测序(NGS)技术的最新进展使得巨大的肌节基因肌联蛋白(TTN)成为人类主要疾病基因之一。TTN 的截断变体(TTNtv),特别是在 A 带区域,占扩张型心肌病(DCM)病例的 20%。人们非常关注 TTNtv 在人类疾病中的评估和解释;然而,错义突变和非框架移码插入/缺失(NFS-INDELs)在临床诊断工作流程中很难评估和解释。在来自欧洲三个心脏遗传中心的 530 名原发性 DCM 患者队列中,对 TTN 的所有外显子进行了靶向测序。使用严格的生物信息学筛选,在 6.98%和 0.38%的 DCM 患者中分别发现了 29 种和 2 种罕见的 TTN 错义突变和 NFS-INDEL 预测有害变异。然而,与在最大的可用参考人群数据库中鉴定的变异相比,在 DCM 患者中没有发现此类变异的显著富集。此外,DCM 患者和参考个体的剪接区域错义变异具有预测剪接改变的频率相似。DCM 患者和参考人群的罕见预测有害 TTN 错义变异(包括剪接区域错义变异)的频率相似,表明这些变异不是独立导致 DCM 的原因。因此,尽管在现阶段不能排除修饰作用,但这些变异在临床诊断工作流程中应归类为可能良性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/513f/6412046/064c13b24174/41598_2019_39911_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验