• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Hox-TALE 调控回路在脊椎动物中对神经嵴的模式形成具有保守性。

A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates.

机构信息

Stowers Institute for Medical Research, Kansas City, MO, 64110, USA.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.

出版信息

Nat Commun. 2019 Mar 13;10(1):1189. doi: 10.1038/s41467-019-09197-8.

DOI:10.1038/s41467-019-09197-8
PMID:30867425
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6416258/
Abstract

In jawed vertebrates (gnathostomes), Hox genes play an important role in patterning head and jaw formation, but mechanisms coupling Hox genes to neural crest (NC) are unknown. Here we use cross-species regulatory comparisons between gnathostomes and lamprey, a jawless extant vertebrate, to investigate conserved ancestral mechanisms regulating Hox2 genes in NC. Gnathostome Hoxa2 and Hoxb2 NC enhancers mediate equivalent NC expression in lamprey and gnathostomes, revealing ancient conservation of Hox upstream regulatory components in NC. In characterizing a lamprey hoxα2 NC/hindbrain enhancer, we identify essential Meis, Pbx, and Hox binding sites that are functionally conserved within Hoxa2/Hoxb2 NC enhancers. This suggests that the lamprey hoxα2 enhancer retains ancestral activity and that Hoxa2/Hoxb2 NC enhancers are ancient paralogues, which diverged in hindbrain and NC activities. This identifies an ancestral mechanism for Hox2 NC regulation involving a Hox-TALE regulatory circuit, potentiated by inputs from Meis and Pbx proteins and Hox auto-/cross-regulatory interactions.

摘要

在有颌脊椎动物(颌口类)中,Hox 基因在头部和颌骨形成的模式形成中起着重要作用,但将 Hox 基因与神经嵴(NC)偶联的机制尚不清楚。在这里,我们使用颌口类和无颌现存脊椎动物七鳃鳗之间的跨物种调控比较,研究调控 NC 中 Hox2 基因的保守祖先机制。颌口类 Hoxa2 和 Hoxb2 的 NC 增强子在七鳃鳗和颌口类中介导等效的 NC 表达,揭示了 NC 中 Hox 上游调控成分的古老保守性。在对七鳃鳗 hoxα2 NC/后脑增强子进行表征时,我们鉴定了必需的 Meis、Pbx 和 Hox 结合位点,这些位点在 Hoxa2/Hoxb2 的 NC 增强子中具有功能保守性。这表明,七鳃鳗 hoxα2 增强子保留了祖先的活性,而 Hoxa2/Hoxb2 的 NC 增强子是古老的同源物,它们在后脑和 NC 活性上发生了分化。这确定了涉及 Hox-TALE 调控回路的 Hox2 NC 调控的祖先机制,该机制由 Meis 和 Pbx 蛋白以及 Hox 自/交叉调控相互作用的输入增强。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/3a3d845ada25/41467_2019_9197_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/88d801039fc1/41467_2019_9197_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/1d07e1ab81d9/41467_2019_9197_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/dc809b3bacd6/41467_2019_9197_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/c638a033d2f0/41467_2019_9197_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/79937f7a365a/41467_2019_9197_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/d3678a1534b8/41467_2019_9197_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/6de0b99925d5/41467_2019_9197_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/3a3d845ada25/41467_2019_9197_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/88d801039fc1/41467_2019_9197_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/1d07e1ab81d9/41467_2019_9197_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/dc809b3bacd6/41467_2019_9197_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/c638a033d2f0/41467_2019_9197_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/79937f7a365a/41467_2019_9197_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/d3678a1534b8/41467_2019_9197_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/6de0b99925d5/41467_2019_9197_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44f/6416258/3a3d845ada25/41467_2019_9197_Fig8_HTML.jpg

相似文献

1
A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates.Hox-TALE 调控回路在脊椎动物中对神经嵴的模式形成具有保守性。
Nat Commun. 2019 Mar 13;10(1):1189. doi: 10.1038/s41467-019-09197-8.
2
Analysis of lamprey meis genes reveals that conserved inputs from Hox, Meis and Pbx proteins control their expression in the hindbrain and neural tube.对七鳃鳗 meis 基因的分析表明,来自 Hox、Meis 和 Pbx 蛋白的保守输入控制了它们在后脑和神经管中的表达。
Dev Biol. 2021 Nov;479:61-76. doi: 10.1016/j.ydbio.2021.07.014. Epub 2021 Jul 24.
3
A Hox regulatory network of hindbrain segmentation is conserved to the base of vertebrates.后脑节段化的Hox调控网络在脊椎动物基部是保守的。
Nature. 2014 Oct 23;514(7523):490-3. doi: 10.1038/nature13723. Epub 2014 Sep 14.
4
An atlas of anterior hox gene expression in the embryonic sea lamprey head: Hox-code evolution in vertebrates.前 HOX 基因在胚胎七鳃鳗头部中的表达图谱:脊椎动物的 HOX 编码进化。
Dev Biol. 2019 Sep 1;453(1):19-33. doi: 10.1016/j.ydbio.2019.05.001. Epub 2019 May 6.
5
Conservation and diversity in the cis-regulatory networks that integrate information controlling expression of Hoxa2 in hindbrain and cranial neural crest cells in vertebrates.在脊椎动物后脑和颅神经嵴细胞中整合控制Hoxa2基因表达信息的顺式调控网络中的保守性与多样性。
Dev Biol. 2002 Jun 1;246(1):45-56. doi: 10.1006/dbio.2002.0665.
6
Expression of Hoxa2 in rhombomere 4 is regulated by a conserved cross-regulatory mechanism dependent upon Hoxb1.同源框A2(Hoxa2)在菱脑节4中的表达受一种保守的交叉调节机制调控,该机制依赖于同源框B1(Hoxb1)。
Dev Biol. 2007 Feb 15;302(2):646-60. doi: 10.1016/j.ydbio.2006.10.029. Epub 2006 Oct 25.
7
Trimeric association of Hox and TALE homeodomain proteins mediates Hoxb2 hindbrain enhancer activity.Hox与TALE同源异型结构域蛋白的三聚体结合介导Hoxb2后脑增强子活性。
Mol Cell Biol. 1999 Jul;19(7):5134-42. doi: 10.1128/MCB.19.7.5134.
8
Coupling the roles of Hox genes to regulatory networks patterning cranial neural crest.将Hox基因的作用与构建颅神经嵴模式的调控网络相结合。
Dev Biol. 2018 Dec 1;444 Suppl 1:S67-S78. doi: 10.1016/j.ydbio.2018.03.016. Epub 2018 Mar 20.
9
Conserved RARE localization in amphioxus Hox clusters and implications for Hox code evolution in the vertebrate neural crest.文昌鱼Hox基因簇中保守的稀有定位及其对脊椎动物神经嵴中Hox编码进化的影响。
Dev Dyn. 2006 Jun;235(6):1522-31. doi: 10.1002/dvdy.20730.
10
Analyses of fugu hoxa2 genes provide evidence for subfunctionalization of neural crest cell and rhombomere cis-regulatory modules during vertebrate evolution.对河豚hoxa2基因的分析为脊椎动物进化过程中神经嵴细胞和菱脑节顺式调控模块的亚功能化提供了证据。
Dev Biol. 2016 Jan 15;409(2):530-42. doi: 10.1016/j.ydbio.2015.11.006. Epub 2015 Nov 26.

引用本文的文献

1
Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards.适应性渗入揭示了壁蜥性选择综合征的遗传基础。
Sci Adv. 2024 Apr 5;10(14):eadk9315. doi: 10.1126/sciadv.adk9315. Epub 2024 Apr 3.
2
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation.多组学分析鉴定出人类多巴胺能神经元分化的新型促进因子。
EMBO Rep. 2024 Jan;25(1):254-285. doi: 10.1038/s44319-023-00024-2. Epub 2023 Dec 19.
3
Linking Vertebrate Gene Duplications to the New Head Hypothesis.将脊椎动物基因复制与新头部假说联系起来。

本文引用的文献

1
A new look at an old question: when did the second whole genome duplication occur in vertebrate evolution?重新审视一个老问题:脊椎动物进化中的第二次全基因组复制发生在什么时候?
Genome Biol. 2018 Nov 28;19(1):209. doi: 10.1186/s13059-018-1592-0.
2
Chromosome evolution at the origin of the ancestral vertebrate genome.脊椎动物祖先基因组起源时的染色体进化。
Genome Biol. 2018 Oct 17;19(1):166. doi: 10.1186/s13059-018-1559-1.
3
Hagfish and lamprey Hox genes reveal conservation of temporal colinearity in vertebrates.八目鳗和七鳃鳗的 Hox 基因揭示了脊椎动物中时间共线性的保守性。
Biology (Basel). 2023 Sep 6;12(9):1213. doi: 10.3390/biology12091213.
4
Human Oral Mucosa as a Potentially Effective Source of Neural Crest Stem Cells for Clinical Practice.人类口腔黏膜作为临床应用中神经嵴干细胞的潜在有效来源。
Cells. 2023 Sep 6;12(18):2216. doi: 10.3390/cells12182216.
5
A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2.由 PBX1/2 指导的时空受限基因调控网络通过 HAND2 获得肢体模式特异性。
Nat Commun. 2023 Jul 6;14(1):3993. doi: 10.1038/s41467-023-39443-z.
6
Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube.共享视黄酸反应增强子协调调控发育中的小鼠神经管中 Hoxb 编码和非编码 RNA 的初生转录。
Development. 2023 May 15;150(10). doi: 10.1242/dev.201259. Epub 2023 May 24.
7
Next-generation plasmids for transgenesis in zebrafish and beyond.用于斑马鱼及其它动物基因转移的新一代质粒。
Development. 2023 Apr 15;150(8). doi: 10.1242/dev.201531. Epub 2023 Apr 19.
8
Meis2 controls skeletal formation in the hyoid region.Meis2控制舌骨区域的骨骼形成。
Front Cell Dev Biol. 2022 Sep 28;10:951063. doi: 10.3389/fcell.2022.951063. eCollection 2022.
9
Hox proteins as regulators of extracellular matrix interactions during neural crest migration.Hox 蛋白作为神经嵴迁移过程中细胞外基质相互作用的调节剂。
Differentiation. 2022 Nov-Dec;128:26-32. doi: 10.1016/j.diff.2022.09.003. Epub 2022 Oct 4.
10
The developmental and evolutionary origins of cellular pluripotency in the vertebrate neural crest.脊椎动物神经嵴中细胞多能性的发育和进化起源。
Semin Cell Dev Biol. 2023 Mar 30;138:36-44. doi: 10.1016/j.semcdb.2022.04.008. Epub 2022 May 6.
Nat Ecol Evol. 2018 May;2(5):859-866. doi: 10.1038/s41559-018-0526-2. Epub 2018 Apr 2.
4
Coupling the roles of Hox genes to regulatory networks patterning cranial neural crest.将Hox基因的作用与构建颅神经嵴模式的调控网络相结合。
Dev Biol. 2018 Dec 1;444 Suppl 1:S67-S78. doi: 10.1016/j.ydbio.2018.03.016. Epub 2018 Mar 20.
5
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.海鞘生殖细胞基因组为程序性基因组重排和脊椎动物进化提供了线索。
Nat Genet. 2018 Feb;50(2):270-277. doi: 10.1038/s41588-017-0036-1. Epub 2018 Jan 22.
6
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.JASPAR 2018:转录因子结合谱开放获取数据库及其网络框架的更新
Nucleic Acids Res. 2018 Jan 4;46(D1):D1284. doi: 10.1093/nar/gkx1188.
7
Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.Hoxa1在胚胎干细胞的神经分化过程以及小鼠胚胎发育过程中靶向信号通路。
Dev Biol. 2017 Dec 1;432(1):151-164. doi: 10.1016/j.ydbio.2017.09.033. Epub 2017 Oct 2.
8
Hox gene cluster of the ascidian, , reveals multiple ancient steps of cluster disintegration during ascidian evolution.海鞘的Hox基因簇揭示了海鞘进化过程中基因簇解体的多个古老步骤。
Zoological Lett. 2017 Sep 15;3:17. doi: 10.1186/s40851-017-0078-3. eCollection 2017.
9
Regulatory Logic Underlying Diversification of the Neural Crest.神经嵴多样化背后的调控逻辑。
Trends Genet. 2017 Oct;33(10):715-727. doi: 10.1016/j.tig.2017.07.015. Epub 2017 Aug 26.
10
HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.HOXA1 和 TALE 蛋白显示出交叉调控相互作用,并在 HOXA1 靶标上形成组合结合密码。
Genome Res. 2017 Sep;27(9):1501-1512. doi: 10.1101/gr.219386.116. Epub 2017 Aug 7.