State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China.
Nature. 2019 Apr;568(7750):122-126. doi: 10.1038/s41586-019-1021-x. Epub 2019 Mar 13.
Pericyclic reactions are powerful transformations for the construction of carbon-carbon and carbon-heteroatom bonds in organic synthesis. Their role in biosynthesis is increasingly apparent, and mechanisms by which pericyclases can catalyse reactions are of major interest. [4+2] cycloadditions (Diels-Alder reactions) have been widely used in organic synthesis for the formation of six-membered rings and are now well-established in biosynthesis. [6+4] and other 'higher-order' cycloadditions were predicted in 1965, and are now increasingly common in the laboratory despite challenges arising from the generation of a highly strained ten-membered ring system. However, although enzyme-catalysed [6+4] cycloadditions have been proposed, they have not been proven to occur. Here we demonstrate a group of enzymes that catalyse a pericyclic [6+4] cycloaddition, which is a crucial step in the biosynthesis of streptoseomycin-type natural products. This type of pericyclase catalyses [6+4] and [4+2] cycloadditions through a single ambimodal transition state, which is consistent with previous proposals. The [6+4] product is transformed to a less stable [4+2] adduct via a facile Cope rearrangement, and the [4+2] adduct is converted into the natural product enzymatically. Crystal structures of three pericyclases, computational simulations of potential energies and molecular dynamics, and site-directed mutagenesis establish the mechanism of this transformation. This work shows how enzymes are able to catalyse concerted pericyclic reactions involving ambimodal transition states.
周环反应是有机合成中构建碳-碳和碳-杂原子键的有力转化。它们在生物合成中的作用越来越明显,周环酶催化反应的机制也引起了极大的关注。[4+2]环加成(Diels-Alder 反应)在有机合成中广泛用于形成六元环,现在在生物合成中也得到了很好的应用。[6+4]和其他“高阶”环加成反应早在 1965 年就被预测到了,尽管由于生成高度应变的十元环体系而带来了挑战,但现在在实验室中越来越常见。然而,尽管已经提出了酶催化的[6+4]环加成反应,但尚未证明其发生。在这里,我们展示了一组能够催化周环[6+4]环加成反应的酶,该反应是链霉糖型天然产物生物合成中的关键步骤。这种周环酶通过单一的双模态过渡态催化[6+4]和[4+2]环加成反应,这与之前的提议一致。[6+4]产物通过易发生的 Cope 重排转化为不太稳定的[4+2]加合物,[4+2]加合物通过酶促转化为天然产物。三种周环酶的晶体结构、势能的计算模拟和分子动力学以及定点突变实验确定了这种转化的机制。这项工作表明了酶如何能够催化涉及双模态过渡态的协同周环反应。