Suppr超能文献

多杀菌素A生物合成中的动态复杂[6+4]和[4+2]环加成反应。

Dynamically Complex [6+4] and [4+2] Cycloadditions in the Biosynthesis of Spinosyn A.

作者信息

Patel Ashay, Chen Zhuo, Yang Zhongyue, Gutiérrez Osvaldo, Liu Hung-wen, Houk K N, Singleton Daniel A

机构信息

Department of Chemistry and Biochemistry, University of California , Los Angeles, California 90095-1569, United States.

Department of Chemistry, Texas A & M University , College Station, Texas 77843-3255, United States.

出版信息

J Am Chem Soc. 2016 Mar 23;138(11):3631-4. doi: 10.1021/jacs.6b00017. Epub 2016 Mar 9.

Abstract

SpnF, an enzyme involved in the biosynthesis of spinosyn A, catalyzes a transannular Diels-Alder reaction. Quantum mechanical computations and dynamic simulations now show that this cycloaddition is not well described as either a concerted or stepwise process, and dynamical effects influence the identity and timing of bond formation. The transition state for the reaction is ambimodal and leads directly to both the observed Diels-Alder and an unobserved [6+4] cycloadduct. The potential energy surface bifurcates and the cycloadditions occur by dynamically stepwise modes featuring an "entropic intermediate". A rapid Cope rearrangement converts the [6+4] adduct into the observed [4+2] adduct. Control of nonstatistical dynamical effects may serve as another way by which enzymes control reactions.

摘要

SpnF是一种参与多杀菌素A生物合成的酶,催化分子内环Diels-Alder反应。量子力学计算和动力学模拟表明,这种环加成反应既不能很好地描述为协同过程,也不能很好地描述为分步过程,动力学效应会影响键形成的特性和时机。该反应的过渡态是双峰的,直接导致观察到的Diels-Alder环加成产物和未观察到的[6+4]环加成产物。势能面发生分支,环加成反应通过具有“熵中间体”的动态分步模式发生。快速的Cope重排将[6+4]加合物转化为观察到的[4+2]加合物。控制非统计动力学效应可能是酶控制反应的另一种方式。

相似文献

1
Dynamically Complex [6+4] and [4+2] Cycloadditions in the Biosynthesis of Spinosyn A.
J Am Chem Soc. 2016 Mar 23;138(11):3631-4. doi: 10.1021/jacs.6b00017. Epub 2016 Mar 9.
2
Influence of water and enzyme SpnF on the dynamics and energetics of the ambimodal [6+4]/[4+2] cycloaddition.
Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):E848-E855. doi: 10.1073/pnas.1719368115. Epub 2018 Jan 18.
3
Enzyme-catalysed [4+2] cycloaddition is a key step in the biosynthesis of spinosyn A.
Nature. 2011 May 5;473(7345):109-12. doi: 10.1038/nature09981.
4
Computational Insights into an Enzyme-Catalyzed [4+2] Cycloaddition.
J Org Chem. 2017 Dec 15;82(24):13563-13571. doi: 10.1021/acs.joc.7b02794. Epub 2017 Nov 29.
5
Investigation of the mechanism of the SpnF-catalyzed [4+2]-cycloaddition reaction in the biosynthesis of spinosyn A.
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):10408-10413. doi: 10.1073/pnas.1710496114. Epub 2017 Sep 5.
6
Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.
Nature. 2019 Apr;568(7750):122-126. doi: 10.1038/s41586-019-1021-x. Epub 2019 Mar 13.
9
Computational study of a model system of enzyme-mediated [4+2] cycloaddition reaction.
PLoS One. 2015 Apr 8;10(4):e0119984. doi: 10.1371/journal.pone.0119984. eCollection 2015.
10
Diels-Alder reactions of allene with benzene and butadiene: concerted, stepwise, and ambimodal transition states.
J Org Chem. 2014 Oct 3;79(19):8968-76. doi: 10.1021/jo502041f. Epub 2014 Sep 18.

引用本文的文献

2
Interplay between Energy and Entropy Mediates Ambimodal Selectivity of Cycloadditions.
J Chem Theory Comput. 2024 Dec 24;20(24):10942-10951. doi: 10.1021/acs.jctc.4c01138. Epub 2024 Dec 6.
3
Predicting Selectivity with a Bifurcating Surface: Inaccurate Model or Inaccurate Statistics of Dynamics?
J Phys Chem A. 2024 Aug 15;128(32):6798-6805. doi: 10.1021/acs.jpca.4c04039. Epub 2024 Aug 5.
4
The evolutionary origin of naturally occurring intermolecular Diels-Alderases from Morus alba.
Nat Commun. 2024 Mar 20;15(1):2492. doi: 10.1038/s41467-024-46845-0.
5
Computational studies of Brønsted acid-catalyzed transannular cycloadditions of cycloalkenone hydrazones.
Beilstein J Org Chem. 2023 Apr 20;19:477-486. doi: 10.3762/bjoc.19.37. eCollection 2023.
6
-Adenosylmethionine: more than just a methyl donor.
Nat Prod Rep. 2023 Sep 20;40(9):1521-1549. doi: 10.1039/d2np00086e.
8
Mimicry of the proton wire mechanism of enzymes inside a supramolecular capsule enables β-selective O-glycosylations.
Nat Chem. 2022 Sep;14(9):985-994. doi: 10.1038/s41557-022-00981-6. Epub 2022 Jul 7.
10
Collective Synthesis of Illudalane Sesquiterpenes via Cascade Inverse Electron Demand (4 + 2) Cycloadditions of Thiophene ,-Dioxides.
J Am Chem Soc. 2022 Jun 8;144(22):10017-10024. doi: 10.1021/jacs.2c03304. Epub 2022 May 24.

本文引用的文献

1
Natural Diels-Alderases: Elusive and Irresistable.
J Org Chem. 2015 Dec 4;80(23):11672-85. doi: 10.1021/acs.joc.5b01951.
2
Transannular [6 + 4] and Ambimodal Cycloaddition in the Biosynthesis of Heronamide A.
J Am Chem Soc. 2015 Oct 28;137(42):13518-23. doi: 10.1021/jacs.5b06656. Epub 2015 Oct 15.
3
Involvement of Lipocalin-like CghA in Decalin-Forming Stereoselective Intramolecular [4+2] Cycloaddition.
Chembiochem. 2015 Nov 2;16(16):2294-8. doi: 10.1002/cbic.201500386. Epub 2015 Oct 2.
4
Diels-Alderase-free, bis-pericyclic, [4+2] dimerization in the biosynthesis of (±)-paracaseolide A.
Nat Chem. 2015 Aug;7(8):641-5. doi: 10.1038/nchem.2281. Epub 2015 Jun 22.
6
Diels-Alder reactions of allene with benzene and butadiene: concerted, stepwise, and ambimodal transition states.
J Org Chem. 2014 Oct 3;79(19):8968-76. doi: 10.1021/jo502041f. Epub 2014 Sep 18.
7
Biosynthetic consequences of multiple sequential post-transition-state bifurcations.
Nat Chem. 2014 Feb;6(2):104-11. doi: 10.1038/nchem.1843. Epub 2014 Jan 19.
9
Dynamics, transition states, and timing of bond formation in Diels-Alder reactions.
Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):12860-5. doi: 10.1073/pnas.1209316109. Epub 2012 Jul 2.
10
Current developments and challenges in the search for a naturally selected Diels-Alderase.
Curr Opin Chem Biol. 2012 Apr;16(1-2):124-31. doi: 10.1016/j.cbpa.2011.12.017. Epub 2012 Jan 17.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验