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Snf2 介导的染色质重塑过程中 DNA 易位的机制。

Mechanism of DNA translocation underlying chromatin remodelling by Snf2.

机构信息

MOE Key Laboratory of Protein Science, Tsinghua University, Beijing, China.

School of Life Science, Tsinghua University, Beijing, China.

出版信息

Nature. 2019 Mar;567(7748):409-413. doi: 10.1038/s41586-019-1029-2. Epub 2019 Mar 13.

Abstract

Chromatin remodellers include diverse enzymes with distinct biological functions, but nucleosome-sliding activity appears to be a common theme. Among the remodelling enzymes, Snf2 serves as the prototype to study the action of this protein family. Snf2 and related enzymes share two conserved RecA-like lobes, which by themselves are able to couple ATP hydrolysis to chromatin remodelling. The mechanism by which these enzymes couple ATP hydrolysis to translocate the nucleosome along the DNA remains unclear. Here we report the structures of Saccharomyces cerevisiae Snf2 bound to the nucleosome in the presence of ADP and ADP-BeF. Snf2 in the ADP-bound state adopts an open conformation similar to that in the apo state, and induces a one-base-pair DNA bulge at superhelix location 2 (SHL2), with the tracking strand showing greater distortion than the guide strand. The DNA distortion propagates to the proximal end, leading to staggered translocation of the two strands. The binding of ADP-BeF triggers a closed conformation of the enzyme, resetting the nucleosome to a relaxed state. Snf2 shows altered interactions with the DNA in different nucleotide states, providing the structural basis for DNA translocation. Together, our findings suggest a fundamental mechanism for the DNA translocation that underlies chromatin remodelling.

摘要

染色质重塑因子包括具有不同生物学功能的多种酶,但核小体滑动活性似乎是一个共同的主题。在这些重塑酶中,Snf2 是研究该蛋白家族作用的原型。Snf2 和相关酶共享两个保守的 RecA 样结构域,它们本身能够将 ATP 水解与染色质重塑偶联。这些酶将 ATP 水解偶联到核小体沿着 DNA 转移的机制尚不清楚。在这里,我们报告了在 ADP 和 ADP-BeF 存在下,酿酒酵母 Snf2 与核小体结合的结构。ADP 结合状态下的 Snf2 采用类似于 apo 状态的开放构象,并在超螺旋位置 2 (SHL2) 诱导一个碱基对的 DNA 膨出,其中跟踪链比导向链显示出更大的扭曲。DNA 扭曲传播到近端,导致两条链的交错移位。ADP-BeF 的结合触发酶的闭合构象,将核小体重置为松弛状态。Snf2 在不同核苷酸状态下与 DNA 的相互作用发生改变,为 DNA 易位提供了结构基础。总之,我们的发现为染色质重塑所基于的 DNA 易位提供了一个基本机制。

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