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散发型视网膜色素变性的基因组景观:877 例西班牙病例的发现。

Genomic Landscape of Sporadic Retinitis Pigmentosa: Findings from 877 Spanish Cases.

机构信息

Department of Genetics, Instituto de Investigación Sanitaria-Fundación Jiménez Díaz University Hospital-Universidad Autónoma de Madrid (IIS-FJD, UAM), Madrid, Spain; Center for Biomedical Network Research on Rare Diseases (CIBERER), ISCIII, Madrid, Spain.

Department of Genetics, Instituto de Investigación Sanitaria-Fundación Jiménez Díaz University Hospital-Universidad Autónoma de Madrid (IIS-FJD, UAM), Madrid, Spain.

出版信息

Ophthalmology. 2019 Aug;126(8):1181-1188. doi: 10.1016/j.ophtha.2019.03.018. Epub 2019 Mar 20.

Abstract

PURPOSE

We aimed to unravel the molecular basis of sporadic retinitis pigmentosa (sRP) in the largest cohort reported to date.

DESIGN

Case series.

PARTICIPANTS

A cohort of 877 unrelated Spanish sporadic cases with a clinical diagnosis of retinitis pigmentosa (RP) and negative family history.

METHODS

The cohort was studied by classic genotyping or targeted next-generation sequencing (NGS). Multiplex ligation-dependent probe amplification (MLPA) and array-based comparative genomic hybridization were performed to confirm copy number variations detected by NGS. Quantitative fluorescent polymerase chain reaction was assessed in sRP cases carrying de novo variants to confirm paternity.

MAIN OUTCOME MEASURES

The study of the sRP cohort showed a high proportion of causal autosomal dominant (AD) and X-linked (XL) variants, most of them being de novo.

RESULTS

Causative variants were identified in 38% of the patients studied, segregating recessively in 84.5% of the solved cases. Biallelic variants detected in only 6 different autosomal recessive genes explained 50% of the cases characterized. Causal AD and XL variants were found in 7.6% and 7.9% of cases, respectively. Remarkably, 20 de novo variants were confirmed after trio analysis, explaining 6% of the cases. In addition, 17% of the solved sRP cases were reclassified to a different retinopathy phenotype.

CONCLUSIONS

This study highlights the clinical utility of NGS testing for sRP cases, expands the mutational spectrum, and provides accurate prevalence of mutated genes. Our findings evidence the underestimated role of de novo variants in the etiology of RP, emphasizing the importance of segregation analysis as well as comprehensive screening of genes carrying XL and AD variants in sporadic cases. Such in-depth study is essential for accurate family counseling and future enrollment in gene therapy-based treatments.

摘要

目的

我们旨在揭示迄今为止报道的最大队列中散发型视网膜色素变性(sRP)的分子基础。

设计

病例系列。

参与者

877 例无家族史的西班牙散发型 sRP 患者的队列。

方法

通过经典基因分型或靶向下一代测序(NGS)对该队列进行研究。多重连接依赖性探针扩增(MLPA)和基于阵列的比较基因组杂交用于确认通过 NGS 检测到的拷贝数变异。在携带从头变异的 sRP 病例中进行定量荧光聚合酶链反应以确认亲子关系。

主要观察指标

sRP 队列的研究显示,高比例的常染色体显性(AD)和 X 连锁(XL)变异具有因果关系,其中大多数为从头发生。

结果

在研究的患者中,38%确定了致病变异,84.5%的已解决病例呈隐性遗传。仅在 6 个不同的常染色体隐性基因中检测到双等位基因变异,解释了 50%的特征病例。分别在 7.6%和 7.9%的病例中发现了因果 AD 和 XL 变异。值得注意的是,通过 trio 分析确认了 20 个从头变异,解释了 6%的病例。此外,17%的已解决 sRP 病例被重新归类为不同的视网膜病变表型。

结论

本研究突出了 NGS 测试在 sRP 病例中的临床应用,扩展了突变谱,并提供了突变基因的准确患病率。我们的研究结果证明了从头变异在 RP 病因学中的作用被低估,强调了分离分析以及在散发病例中全面筛查携带 XL 和 AD 变异的基因的重要性。这种深入的研究对于准确的家庭咨询和未来基于基因治疗的治疗方法的招募至关重要。

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