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全外显子组测序有助于加深对韩国患者遗传性视网膜营养不良的理解。

Whole-Exome Sequencing Improves Understanding of Inherited Retinal Dystrophies in Korean Patients.

作者信息

Park Youngchan, Kim Youngjin, Koh Insong, Lee Jong-Young

机构信息

Department of Biomedical Informatics, Hanyang University, Seoul 04763, Republic of Korea.

Division of Bio Bigdata, Department of Precision Medicine, Korea National Institution of Health, KCDC, Cheongju 28159, Republic of Korea.

出版信息

Curr Issues Mol Biol. 2024 Sep 29;46(10):11021-11030. doi: 10.3390/cimb46100654.

DOI:10.3390/cimb46100654
PMID:39451534
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11506058/
Abstract

Retinitis pigmentosa (RP) encompasses a diverse range of hereditary, degenerative retinal ailments, presenting notable obstacles to molecular genetic diagnoses due to the intricate array of variants in different genes involved. This study enrolled 21 probands and their families who have been diagnosed with nonsyndromic RP but without a previous molecular diagnosis. We employed whole-exome sequencing (WES) to detect possible harmful gene variations in individuals with unknown-cause RP at the molecular level. WES allowed the identification of ten potential disease-causing variants in eight different genes. In 8 out of the total 21 patients, this method successfully identified the underlying molecular causes, such as putative pathogenic variants in genes including , , , , , , , and . A novel variant was identified in one of these genes, specifically , providing valuable information on prospective targets for future enhanced gene therapeutic approaches.

摘要

视网膜色素变性(RP)涵盖了多种遗传性、退行性视网膜疾病,由于涉及的不同基因中存在复杂的变异阵列,给分子遗传学诊断带来了显著障碍。本研究招募了21名已被诊断为非综合征性RP但此前未进行分子诊断的先证者及其家族。我们采用全外显子组测序(WES)在分子水平上检测病因不明的RP个体中可能存在的有害基因变异。WES在八个不同基因中鉴定出十个潜在的致病变异。在总共21名患者中的8名患者中,该方法成功确定了潜在的分子病因,例如在包括 、 、 、 、 、 、 和 等基因中的推定致病变异。在这些基因中的一个基因,具体为 中鉴定出一个新的变异,为未来增强基因治疗方法的潜在靶点提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acad/11506058/bd2e9d98ba46/cimb-46-00654-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acad/11506058/bfb35c27df56/cimb-46-00654-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acad/11506058/bd2e9d98ba46/cimb-46-00654-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acad/11506058/bfb35c27df56/cimb-46-00654-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acad/11506058/bd2e9d98ba46/cimb-46-00654-g002.jpg

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本文引用的文献

1
The New Era of Therapeutic Strategies for the Treatment of Retinitis Pigmentosa: A Narrative Review of Pathomolecular Mechanisms for the Development of Cell-Based Therapies.视网膜色素变性治疗策略的新时代:基于细胞疗法发展的病理分子机制的叙述性综述
Biomedicines. 2023 Sep 28;11(10):2656. doi: 10.3390/biomedicines11102656.
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GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data.GATK-gCNV 可从外显子测序数据中发现罕见的拷贝数变异。
Nat Genet. 2023 Sep;55(9):1589-1597. doi: 10.1038/s41588-023-01449-0. Epub 2023 Aug 21.
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Variant interpretation using population databases: Lessons from gnomAD.
使用人群数据库进行变异解释:来自 gnomAD 的经验。
Hum Mutat. 2022 Aug;43(8):1012-1030. doi: 10.1002/humu.24309. Epub 2021 Dec 16.
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Retinal Phenotype of Patients With Isolated Retinal Degeneration Due to CLN3 Pathogenic Variants in a French Retinitis Pigmentosa Cohort.法国视网膜色素变性队列中 CLN3 致病性变异导致的孤立性视网膜变性患者的视网膜表型。
JAMA Ophthalmol. 2021 Mar 1;139(3):278-291. doi: 10.1001/jamaophthalmol.2020.6089.
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dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs.dbNSFP v4:一个全面的人类非同义突变和剪接位点 SNVs 转录体特异性功能预测和注释数据库。
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Pharmacogenomics. 2020 Oct;21(15):1073-1084. doi: 10.2217/pgs-2020-0035. Epub 2020 Oct 6.
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Korean Genome Project: 1094 Korean personal genomes with clinical information.韩国基因组计划:1094 份具有临床信息的韩国人个人基因组。
Sci Adv. 2020 May 27;6(22):eaaz7835. doi: 10.1126/sciadv.aaz7835. eCollection 2020 May.
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Parallel Tests of Whole Exome Sequencing and Copy Number Variant Sequencing Increase the Diagnosis Yields of Rare Pediatric Disorders.全外显子组测序和拷贝数变异测序的平行检测提高了儿童罕见病的诊断率。
Front Genet. 2020 Jun 11;11:473. doi: 10.3389/fgene.2020.00473. eCollection 2020.
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KRGDB: the large-scale variant database of 1722 Koreans based on whole genome sequencing.KRGDB:基于全基因组测序的1722名韩国人的大规模变异数据库。
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The IL17F His161Arg polymorphism, a potential risk locus for psoriasis, increases serum levels of interleukin-17F in an Asian population.白细胞介素 17F His161Arg 多态性是银屑病的一个潜在风险位点,在亚洲人群中增加白细胞介素 17F 的血清水平。
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