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古老的野狼:古DNA调查揭示了晚更新世和全新世意大利遗迹中的种群动态。

Old wild wolves: ancient DNA survey unveils population dynamics in Late Pleistocene and Holocene Italian remains.

作者信息

Ciucani Marta Maria, Palumbo Davide, Galaverni Marco, Serventi Patrizia, Fabbri Elena, Ravegnini Gloria, Angelini Sabrina, Maini Elena, Persico Davide, Caniglia Romolo, Cilli Elisabetta

机构信息

Laboratories of Physical Anthropology and Ancient DNA, Department of Cultural Heritage, University of Bologna, Ravenna, Italy.

Natural History Museum of Denmark, Copenhagen, Denmark.

出版信息

PeerJ. 2019 Mar 27;7:e6424. doi: 10.7717/peerj.6424. eCollection 2019.

Abstract

BACKGROUND

The contemporary Italian wolf () represents a case of morphological and genetic uniqueness. Today, Italian wolves are also the only documented population to fall exclusively within the mitochondrial haplogroup 2, which was the most diffused across Eurasian and North American wolves during the Late Pleistocene. However, the dynamics leading to such distinctiveness are still debated.

METHODS

In order to shed light on the ancient genetic variability of this wolf population and on the origin of its current diversity, we collected 19 Late Pleistocene-Holocene samples from northern Italy, which we analyzed at a short portion of the hypervariable region 1 of the mitochondrial DNA, highly informative for wolf and dog phylogenetic analyses.

RESULTS

Four out of the six detected haplotypes matched the ones found in ancient wolves from northern Europe and Beringia, or in modern European and Chinese wolves, and appeared closely related to the two haplotypes currently found in Italian wolves. The haplotype of two Late Pleistocene samples matched with primitive and contemporary dog sequences from the canine mitochondrial clade A. All these haplotypes belonged to haplogroup 2. The only exception was a Holocene sample dated 3,250 years ago, affiliated to haplogroup 1.

DISCUSSION

In this study we describe the genetic variability of the most ancient wolf specimens from Italy analyzed so far, providing a preliminary overview of the genetic make-up of the population that inhabited this area from the last glacial maximum to the Middle Age period. Our results endorsed that the genetic diversity carried by the Pleistocene wolves here analyzed showed a strong continuity with other northern Eurasian wolf specimens from the same chronological period. Contrarily, the Holocene samples showed a greater similarity only with modern sequences from Europe and Asia, and the occurrence of an haplogroup 1 haplotype allowed to date back previous finding about its presence in this area. Moreover, the unexpected discovery of a 24,700-year-old sample carrying a haplotype that, from the fragment here obtained, falls within the canine clade A, could represent the oldest evidence in Europe of such dog-rich clade. All these findings suggest complex population dynamics that deserve to be further investigated based on mitochondrial or whole genome sequencing.

摘要

背景

当代意大利狼(Canis lupus)代表了一个形态和基因独特的案例。如今,意大利狼也是唯一有记录的完全属于线粒体单倍群2的种群,该单倍群在晚更新世期间在欧亚大陆和北美狼中分布最为广泛。然而,导致这种独特性的动态过程仍存在争议。

方法

为了阐明该狼种群的古代遗传变异性及其当前多样性的起源,我们从意大利北部收集了19个晚更新世 - 全新世样本,并对线粒体DNA高变区1的一小部分进行了分析,该区域对狼和狗的系统发育分析具有高度信息性。

结果

检测到的六个单倍型中有四个与在北欧和白令海峡的古代狼中发现的单倍型相匹配,或者与现代欧洲和中国狼中的单倍型相匹配,并且似乎与目前在意大利狼中发现的两个单倍型密切相关。两个晚更新世样本的单倍型与犬线粒体进化枝A中的原始和当代狗序列相匹配。所有这些单倍型都属于单倍群2。唯一的例外是一个距今3250年的全新世样本,属于单倍群1。

讨论

在本研究中,我们描述了迄今为止分析的来自意大利的最古老狼标本的遗传变异性,初步概述了从末次盛冰期到中世纪时期居住在该地区的种群的基因组成。我们的结果证实,这里分析的更新世狼携带的遗传多样性与同一时期的其他欧亚大陆北部狼标本表现出很强的连续性。相反,全新世样本仅与来自欧洲和亚洲的现代序列表现出更大的相似性,并且单倍群1单倍型的出现使之前关于其在该地区存在的发现得以追溯。此外,意外发现一个有24700年历史且携带一种单倍型的样本,从这里获得的片段来看,该单倍型属于犬进化枝A,这可能是欧洲该富含狗的进化枝的最古老证据。所有这些发现表明存在复杂的种群动态,值得基于线粒体或全基因组测序进行进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2b8/6441319/123cc1b4ca2b/peerj-07-6424-g001.jpg

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