水疱性口炎病毒印第安纳实验室毒株HR和T1026R1以及空斑分离株22 - 20和22 - 25的近完整基因组序列
Near-Complete Genome Sequences of Vesicular Stomatitis Virus Indiana Laboratory Strains HR and T1026R1 and Plaque Isolates 22-20 and 22-25.
作者信息
Russell Thomas M, Santo Evan E, Golebiewski Lisa, Haseley Nathan S, Ferran Maureen C
机构信息
Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA.
Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA
出版信息
Microbiol Resour Announc. 2019 Apr 4;8(14):e00012-19. doi: 10.1128/MRA.00012-19.
Abstract
We report four near-complete genome sequences of vesicular stomatitis virus (VSV) Indiana obtained with Sanger and Illumina next-generation sequencing, namely, laboratory strains HR (heat resistant) and T1026R1 and isolates 22-20 and 22-25. Previously, only the M gene of these viruses had been sequenced, and these sequences were not deposited in GenBank.
摘要
我们报告了通过桑格测序法和Illumina新一代测序技术获得的水疱性口炎病毒（VSV）印第安纳型的四个近乎完整的基因组序列，即实验室菌株HR（耐热型）和T1026R1以及分离株22 - 20和22 - 25。此前，这些病毒仅M基因被测序，且这些序列未存入GenBank。
相似文献
1
Near-Complete Genome Sequences of Vesicular Stomatitis Virus Indiana Laboratory Strains HR and T1026R1 and Plaque Isolates 22-20 and 22-25.水疱性口炎病毒印第安纳实验室毒株HR和T1026R1以及空斑分离株22 - 20和22 - 25的近完整基因组序列
Microbiol Resour Announc. 2019 Apr 4;8(14):e00012-19. doi: 10.1128/MRA.00012-19.
2
Comparative evaluation of pathogenicity of three isolates of vesicular stomatitis virus (Indiana serotype) in pigs.三种水疱性口炎病毒（印第安纳血清型）分离株在猪中的致病性比较评价。
J Gen Virol. 2019 Nov;100(11):1478-1490. doi: 10.1099/jgv.0.001329.
3
Complete Genome Sequences of Two Vesicular Stomatitis Virus Isolates Collected in Mexico.在墨西哥采集的两株水疱性口炎病毒分离株的全基因组序列
Genome Announc. 2017 Sep 14;5(37):e01006-17. doi: 10.1128/genomeA.01006-17.
4
NF-kappaB activation Is delayed in mouse L929 cells infected with interferon suppressing, but not inducing, vesicular stomatitis virus strains.在感染了抑制（而非诱导）干扰素的水疱性口炎病毒株的小鼠L929细胞中，核因子-κB的激活被延迟。
Virology. 1996 Apr 1;218(1):71-80. doi: 10.1006/viro.1996.0167.
5
Near-Complete Genome Sequences of Vesicular Stomatitis Virus Isolates from the 2020 Outbreak in Kansas.2020年堪萨斯州疫情中水泡性口炎病毒分离株的近完整基因组序列
Microbiol Resour Announc. 2021 Feb 18;10(7):e01454-20. doi: 10.1128/MRA.01454-20.
6
Full-length genome analysis of natural isolates of vesicular stomatitis virus (Indiana 1 serotype) from North, Central and South America.来自北美洲、中美洲和南美洲的水疱性口炎病毒（印第安纳1血清型）自然分离株的全基因组分析。
J Gen Virol. 2002 Oct;83(Pt 10):2475-2483. doi: 10.1099/0022-1317-83-10-2475.
7
Polymerase errors accumulating during natural evolution of the glycoprotein gene of vesicular stomatitis virus Indiana serotype isolates.水泡性口炎病毒印第安纳血清型分离株糖蛋白基因自然进化过程中积累的聚合酶错误。
J Virol. 1990 Oct;64(10):4873-83. doi: 10.1128/JVI.64.10.4873-4883.1990.
8
Ability of the matrix protein of vesicular stomatitis virus to suppress beta interferon gene expression is genetically correlated with the inhibition of host RNA and protein synthesis.水泡性口炎病毒基质蛋白抑制β干扰素基因表达的能力与宿主RNA和蛋白质合成的抑制在遗传上相关。
J Virol. 2003 Apr;77(8):4646-57. doi: 10.1128/jvi.77.8.4646-4657.2003.
9
Experimental Evolution Generates Novel Oncolytic Vesicular Stomatitis Viruses with Improved Replication in Virus-Resistant Pancreatic Cancer Cells.实验进化产生新型溶瘤单纯疱疹病毒，改善了对病毒耐药的胰腺癌细胞中的复制。
J Virol. 2020 Jan 17;94(3). doi: 10.1128/JVI.01643-19.
10
Characterization of virulent isolates of vesicular stomatitis virus in relation to interference by defective particles.水泡性口炎病毒强毒株与缺陷颗粒干扰作用相关的特性分析
Microb Pathog. 1986 Apr;1(2):205-15. doi: 10.1016/0882-4010(86)90022-7.
引用本文的文献
1
Pseudotyped Viruses: A Useful Platform for Pre-Clinical Studies Conducted in a BSL-2 Laboratory Setting.假型病毒：在生物安全二级（BSL-2）实验室环境中进行临床前研究的有用平台。
Biomolecules. 2025 Jan 15;15(1):135. doi: 10.3390/biom15010135.
2
Computational prediction of intracellular targets of wild-type or mutant vesicular stomatitis matrix protein.计算预测野生型或突变型水疱性口炎基质蛋白的细胞内靶标。
PLoS One. 2022 Feb 2;17(2):e0263065. doi: 10.1371/journal.pone.0263065. eCollection 2022.
3
The VSV matrix protein inhibits NF-κB and the interferon response independently in mouse L929 cells.VSV 基质蛋白在小鼠 L929 细胞中独立地抑制 NF-κB 和干扰素反应。
Virology. 2020 Sep;548:117-123. doi: 10.1016/j.virol.2020.06.013. Epub 2020 Jun 29.
本文引用的文献
1
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
2
STAR: ultrafast universal RNA-seq aligner.STAR：超快通用 RNA-seq 对齐工具。
Bioinformatics. 2013 Jan 1;29(1):15-21. doi: 10.1093/bioinformatics/bts635. Epub 2012 Oct 25.
3
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
4
Database resources of the National Center for Biotechnology.国家生物技术信息中心的数据库资源。
Nucleic Acids Res. 2003 Jan 1;31(1):28-33. doi: 10.1093/nar/gkg033.
5
Full-length genome analysis of natural isolates of vesicular stomatitis virus (Indiana 1 serotype) from North, Central and South America.来自北美洲、中美洲和南美洲的水疱性口炎病毒（印第安纳1血清型）自然分离株的全基因组分析。
J Gen Virol. 2002 Oct;83(Pt 10):2475-2483. doi: 10.1099/0022-1317-83-10-2475.
6
The matrix protein of vesicular stomatitis virus inhibits nucleocytoplasmic transport when it is in the nucleus and associated with nuclear pore complexes.水泡性口炎病毒的基质蛋白在位于细胞核并与核孔复合体结合时，会抑制核质运输。
Mol Cell Biol. 2000 Nov;20(22):8590-601. doi: 10.1128/MCB.20.22.8590-8601.2000.
7
The vesicular stomatitis virus matrix protein inhibits transcription from the human beta interferon promoter.水疱性口炎病毒基质蛋白抑制人β干扰素启动子的转录。
J Virol. 1997 Jan;71(1):371-7. doi: 10.1128/JVI.71.1.371-377.1997.
8
The role of vesicular stomatitis virus matrix protein in inhibition of host-directed gene expression is genetically separable from its function in virus assembly.水泡性口炎病毒基质蛋白在抑制宿主导向基因表达中的作用在基因上与其在病毒组装中的功能是可分离的。
J Virol. 1993 Aug;67(8):4814-21. doi: 10.1128/JVI.67.8.4814-4821.1993.
9
Interferon induction by viruses. XXII. Vesicular stomatitis virus-Indiana: M-protein and leader RNA do not regulate interferon induction in chicken embryo cells.病毒诱导的干扰素。XXII. 水疱性口炎病毒 - 印第安纳株：M蛋白和前导RNA不调节鸡胚细胞中的干扰素诱导。
J Interferon Res. 1993 Dec;13(6):413-8. doi: 10.1089/jir.1993.13.413.
10
Interferon induction: regulation by both virus and cell.干扰素诱导：受病毒和细胞的双重调控。
Hokkaido Igaku Zasshi. 1994 Nov;69(6):1320-31.
Zotero 插件