（米契尔）格林氏豆科植物的固氮共生菌——LVM 105菌株的基因组序列草图
Draft Genome Sequence of sp. Strain LVM 105, a Nitrogen-Fixing Symbiont of (Michx.) Greene.
作者信息
Krishnan Hari B, Kim Won-Seok, Givan Scott A
机构信息
Plant Genetics Research, USDA-Agricultural Research Service, Columbia, Missouri, USA
Plant Science Division, University of Missouri, Columbia, Missouri, USA.
出版信息
Microbiol Resour Announc. 2019 Apr 4;8(14):e00132-19. doi: 10.1128/MRA.00132-19.
Abstract
Here, we present the draft genome sequence of sp. strain LVM 105, a soil bacterium that forms nitrogen-fixing nodules on the roots of partridge pea. The genome size was 8,386,213 bp, with a GC content of 63.8%. The draft assembly contained 97 scaffolds with an value of 415,026 bp.
摘要
在此，我们展示了sp. 菌株LVM 105的基因组序列草图，该菌株是一种土壤细菌，能在鹧鸪豆根部形成固氮根瘤。基因组大小为8,386,213 bp，GC含量为63.8%。草图组装包含97个支架，contig N50值为415,026 bp。
相似文献
1
Draft Genome Sequence of sp. Strain LVM 105, a Nitrogen-Fixing Symbiont of (Michx.) Greene.（米契尔）格林氏豆科植物的固氮共生菌——LVM 105菌株的基因组序列草图
Microbiol Resour Announc. 2019 Apr 4;8(14):e00132-19. doi: 10.1128/MRA.00132-19.
2
sp. nov., an effective nitrogen-fixing symbiont of partridge pea [ (Michx.) Greene], a native caesalpinioid legume broadly distributed in the USA.sp. nov.，一种雀稗（Michx.）Greene 的有效固氮共生体，雀稗是一种广泛分布于美国的本土苏木科豆科植物。
Int J Syst Evol Microbiol. 2019 Nov;69(11):3448-3459. doi: 10.1099/ijsem.0.003640.
3
Draft genome sequence of sp. strain Oc8 isolated from nodule.从根瘤中分离得到的Oc8菌株的基因组序列草图。
Curr Res Microb Sci. 2021 Oct 15;2:100074. doi: 10.1016/j.crmicr.2021.100074. eCollection 2021 Dec.
4
sp. nov., a nitrogen-fixing lineage isolated from nodules of the caesalpinioid species and characterized by tolerance to high temperature .sp. nov.，一种从 Caesalpinioid 物种的根瘤中分离出来的固氮谱系，其特征是对高温的耐受性。
Int J Syst Evol Microbiol. 2019 Dec;69(12):3863-3877. doi: 10.1099/ijsem.0.003697.
5
Draft genome sequence of Bradyrhizobium sp. strain BR 3267, an elite strain recommended for cowpea inoculation in Brazil.慢生根瘤菌属菌株BR 3267的基因组序列草图，该菌株是巴西推荐用于豇豆接种的优良菌株。
Braz J Microbiol. 2016 Oct-Dec;47(4):781-782. doi: 10.1016/j.bjm.2016.03.002. Epub 2016 Apr 1.
6
Draft genome sequence of Bradyrhizobium sp. strain BR 3262, an effective microsymbiont recommended for cowpea inoculation in Brazil.慢生根瘤菌属菌株BR 3262的基因组序列草图，该菌株是巴西推荐用于豇豆接种的一种有效的微共生体。
Braz J Microbiol. 2016 Oct-Dec;47(4):783-784. doi: 10.1016/j.bjm.2016.03.001. Epub 2016 Apr 1.
7
Draft genome sequence of Bradyrhizobium manausense strain BR 3351, an effective symbiont isolated from Amazon rainforest.来自亚马逊雨林的有效共生体马瑙斯慢生根瘤菌菌株BR 3351的基因组序列草图
Braz J Microbiol. 2017 Oct-Dec;48(4):610-611. doi: 10.1016/j.bjm.2016.10.025. Epub 2017 Feb 9.
8
Detrimental effects of rhizobial inoculum early in the life of partridge pea, Chamaecrista fasciculata.根瘤菌菌剂在野决明生活早期的有害影响。
Am J Bot. 2018 Apr;105(4):796-802. doi: 10.1002/ajb2.1077. Epub 2018 May 16.
9
Draft Genome Sequences of Nitrogen-Fixing Bradyrhizobia Isolated from Root Nodules of Peanut, Arachis hypogaea, Cultivated in Southern Tunisia.从突尼斯南部种植的花生（Arachis hypogaea）根瘤中分离出的固氮慢生根瘤菌的基因组序列草图
Microbiol Resour Announc. 2021 Jul 22;10(29):e0043421. doi: 10.1128/MRA.00434-21.
10
Genome Sequence of Bradyrhizobium stylosanthis Strain BR 446T, a Nitrogen-Fixing Symbiont of the Legume Pasture Stylosanthes guianensis.柱花草慢生根瘤菌BR 446T的基因组序列，豆科牧草圭亚那柱花草的固氮共生菌
Genome Announc. 2016 Jun 30;4(3):e00631-16. doi: 10.1128/genomeA.00631-16.
本文引用的文献
1
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
2
REAPR: a universal tool for genome assembly evaluation.REAPR：一种用于基因组组装评估的通用工具。
Genome Biol. 2013 May 27;14(5):R47. doi: 10.1186/gb-2013-14-5-r47.
3
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
4
The type III Secretion System of Bradyrhizobium japonicum USDA122 mediates symbiotic incompatibility with Rj2 soybean plants.根瘤菌属 USDA122 的 III 型分泌系统介导了与 Rj2 大豆植株的共生不相容性。
Appl Environ Microbiol. 2013 Feb;79(3):1048-51. doi: 10.1128/AEM.03297-12. Epub 2012 Nov 30.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
6
Feature-by-feature--evaluating de novo sequence assembly.逐特征评估从头序列组装。
PLoS One. 2012;7(2):e31002. doi: 10.1371/journal.pone.0031002. Epub 2012 Feb 3.
7
Venturing beyond beans and peas: what can we learn from Chamaecrista?超越豆类和豌豆：我们能从决明属中学到什么？
Plant Physiol. 2009 Nov;151(3):1041-7. doi: 10.1104/pp.109.144774. Epub 2009 Sep 15.
8
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.短DNA序列与人类基因组的超快速且内存高效比对。
Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.
9
The rest of the iceberg. Legume diversity and evolution in a phylogenetic context.冰山的其余部分。系统发育背景下的豆科植物多样性与进化。
Plant Physiol. 2003 Mar;131(3):900-10. doi: 10.1104/pp.102.018150.
Zotero 插件