• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

IsomiRs:超越种子的 miRNA 抑制工具包扩展。

IsomiRs: Expanding the miRNA repression toolbox beyond the seed.

机构信息

RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, United States.

RNA Mediated Gene Regulation Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, United States.

出版信息

Biochim Biophys Acta Gene Regul Mech. 2020 Apr;1863(4):194373. doi: 10.1016/j.bbagrm.2019.03.005. Epub 2019 Apr 4.

DOI:10.1016/j.bbagrm.2019.03.005
PMID:30953728
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6776719/
Abstract

MicroRNAs (miRNAs) are a class of small non-coding RNAs that play increasingly appreciated roles in gene regulation. In animals, miRNAs silence gene expression by binding to partially complementary sequences within target mRNAs. It is well-established that miRNAs recognize canonical target sites by base-pairing in the 5'region. However, the development of biochemical methods has identified many novel, non-canonical target sites, suggesting additional modes of miRNA-target association. Here, we review the current knowledge of miRNA-target recognition and how new evidence supports or challenges existing models. We also review the process by which microRNA isoforms achieve functional diversification via modulation of target recognition.

摘要

微小 RNA(miRNA)是一类小的非编码 RNA,在基因调控中发挥着越来越重要的作用。在动物中,miRNA 通过与靶 mRNA 内部分互补序列结合来沉默基因表达。已经证实,miRNA 通过在 5' 区域的碱基配对识别典型的靶位点。然而,生化方法的发展已经确定了许多新的、非典型的靶位点,这表明 miRNA 与靶标结合存在额外的模式。在这里,我们回顾了 miRNA 靶标识别的现有知识,以及新的证据如何支持或挑战现有的模型。我们还回顾了通过调节靶标识别,miRNA 同工型实现功能多样化的过程。

相似文献

1
IsomiRs: Expanding the miRNA repression toolbox beyond the seed.IsomiRs:超越种子的 miRNA 抑制工具包扩展。
Biochim Biophys Acta Gene Regul Mech. 2020 Apr;1863(4):194373. doi: 10.1016/j.bbagrm.2019.03.005. Epub 2019 Apr 4.
2
Flexible pri-miRNA structures enable tunable production of 5' isomiRs.灵活的前体 miRNA 结构可实现 5' 异构体的可调产生。
RNA Biol. 2022;19(1):279-289. doi: 10.1080/15476286.2022.2025680. Epub 2021 Dec 31.
3
MicroRNA Target Recognition: Insights from Transcriptome-Wide Non-Canonical Interactions.微小RNA靶标识别:转录组范围非经典相互作用的见解
Mol Cells. 2016 May 31;39(5):375-81. doi: 10.14348/molcells.2016.0013. Epub 2016 Apr 27.
4
A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5'-isoforms in four model species.一项荟萃分析揭示了四个模式物种中小 RNA 5'-异构体的来源、保守性和影响的见解。
Nucleic Acids Res. 2014 Feb;42(3):1427-41. doi: 10.1093/nar/gkt967. Epub 2013 Oct 30.
5
Global profiling and annotation of templated isomiRs dynamics across development.全局分析和注释模板化 isomiRs 在发育过程中的动态变化。
RNA Biol. 2022 Jan;19(1):928-942. doi: 10.1080/15476286.2022.2099646.
6
mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated gain of target interaction diversity and signaling specificity.mi-IsoNet:系统尺度 miRNA 景观揭示了广泛存在的 miRNA 亚型介导的靶基因相互作用多样性和信号特异性。
Brief Bioinform. 2021 Sep 2;22(5). doi: 10.1093/bib/bbab091.
7
A highly expressed miR-101 isomiR is a functional silencing small RNA.高表达的 miR-101 异构体是一种具有功能的沉默性小 RNA。
BMC Genomics. 2013 Feb 15;14:104. doi: 10.1186/1471-2164-14-104.
8
Distinctive profile of IsomiR expression and novel microRNAs in rat heart left ventricle.大鼠心脏左心室中独特的 IsomiR 表达谱和新的 microRNAs。
PLoS One. 2013 Jun 14;8(6):e65809. doi: 10.1371/journal.pone.0065809. Print 2013.
9
Beyond the seed: structural basis for supplementary microRNA targeting by human Argonaute2.超越种子:人类 Argonaute2 补充 microRNA 靶向作用的结构基础。
EMBO J. 2019 Jul 1;38(13):e101153. doi: 10.15252/embj.2018101153. Epub 2019 Apr 26.
10
Quantitative proteomic strategies for the identification of microRNA targets.定量蛋白质组学策略用于鉴定 microRNA 靶标。
Expert Rev Proteomics. 2012 Oct;9(5):549-59. doi: 10.1586/epr.12.49.

引用本文的文献

1
Protein Functional Effector (pfe) Noncoding RNAS Are Identical to Fragments from Various Noncoding RNAs.蛋白质功能效应物(pfe)非编码RNA与来自各种非编码RNA的片段相同。
Int J Mol Sci. 2025 Jul 17;26(14):6870. doi: 10.3390/ijms26146870.
2
Integrated Analysis of miRNA and mRNA Expression Profiles Associated with Development of Skeletal Muscle of Jiangquan Black Pigs.与姜泉黑猪骨骼肌发育相关的miRNA和mRNA表达谱的综合分析
Genes (Basel). 2025 Jun 12;16(6):701. doi: 10.3390/genes16060701.
3
Decoding microRNA arm switching: a key to evolutionary innovation and gene regulation.解读微小RNA臂转换:进化创新与基因调控的关键
Cell Mol Life Sci. 2025 May 10;82(1):197. doi: 10.1007/s00018-025-05663-3.
4
miRglmm: a generalized linear mixed model of isomiR-level counts improves estimation of miRNA-level differential expression and uncovers variable differential expression between isomiRs.miRglmm:一种用于异构体水平计数的广义线性混合模型,可改善对miRNA水平差异表达的估计,并揭示异构体之间的可变差异表达。
Genome Biol. 2025 Apr 22;26(1):102. doi: 10.1186/s13059-025-03549-y.
5
A Thorough Navigation of miRNA's Blueprint in Crafting Cardiovascular Fate.深入探究微小RNA在塑造心血管命运中的蓝图
Health Sci Rep. 2024 Nov 5;7(11):e70136. doi: 10.1002/hsr2.70136. eCollection 2024 Nov.
6
SmithHunter: a workflow for the identification of candidate smithRNAs and their targets.SmithHunter:一种用于鉴定候选 smithRNA 及其靶标的工作流程。
BMC Bioinformatics. 2024 Sep 2;25(1):286. doi: 10.1186/s12859-024-05909-0.
7
miRglmm: a generalized linear mixed model of isomiR-level counts improves estimation of miRNA-level differential expression and uncovers variable differential expression between isomiRs.miRglmm:一种基于异构体水平计数的广义线性混合模型,可改善对miRNA水平差异表达的估计,并揭示异构体之间的可变差异表达。
bioRxiv. 2024 Jul 18:2024.05.03.592274. doi: 10.1101/2024.05.03.592274.
8
Synthesis and Regulation of miRNA, Its Role in Oncogenesis, and Its Association with Colorectal Cancer Progression, Diagnosis, and Prognosis.微小RNA的合成与调控、其在肿瘤发生中的作用及其与结直肠癌进展、诊断和预后的关联
Diagnostics (Basel). 2024 Jul 7;14(13):1450. doi: 10.3390/diagnostics14131450.
9
Target-directed microRNA degradation: Mechanisms, significance, and functional implications.靶向性 microRNA 降解:机制、意义和功能影响。
Wiley Interdiscip Rev RNA. 2024 Mar-Apr;15(2):e1832. doi: 10.1002/wrna.1832.
10
Determining the defining lengths between mature microRNAs/small interfering RNAs and tinyRNAs.确定成熟微小RNA/小干扰RNA与微小RNA之间的界定长度。
bioRxiv. 2023 Oct 28:2023.10.27.564437. doi: 10.1101/2023.10.27.564437.

本文引用的文献

1
The biochemical basis of microRNA targeting efficacy.miRNA 靶向疗效的生化基础。
Science. 2019 Dec 20;366(6472). doi: 10.1126/science.aav1741. Epub 2019 Dec 5.
2
Structural Differences between Pri-miRNA Paralogs Promote Alternative Drosha Cleavage and Expand Target Repertoires.前体 miRNA 同源物之间的结构差异促进了替代的 Drosha 切割,并扩大了靶标谱。
Cell Rep. 2019 Jan 8;26(2):447-459.e4. doi: 10.1016/j.celrep.2018.12.054.
3
Molecular Basis for the Single-Nucleotide Precision of Primary microRNA Processing.微小 RNA 加工的单核苷酸精度的分子基础。
Mol Cell. 2019 Feb 7;73(3):505-518.e5. doi: 10.1016/j.molcel.2018.11.005. Epub 2018 Dec 13.
4
Target RNAs Strike Back on MicroRNAs.靶RNA对微小RNA进行反击。
Front Genet. 2018 Oct 2;9:435. doi: 10.3389/fgene.2018.00435. eCollection 2018.
5
Post-transcriptional control of miRNA biogenesis.miRNA 生物发生的转录后调控。
RNA. 2019 Jan;25(1):1-16. doi: 10.1261/rna.068692.118. Epub 2018 Oct 17.
6
A novel class of microRNA-recognition elements that function only within open reading frames.一类新的仅在开放阅读框内起作用的 microRNA 识别元件。
Nat Struct Mol Biol. 2018 Nov;25(11):1019-1027. doi: 10.1038/s41594-018-0136-3. Epub 2018 Oct 8.
7
QuagmiR: a cloud-based application for isomiR big data analytics.QuagmiR:一个基于云的用于 isomiR 大数据分析的应用程序。
Bioinformatics. 2019 May 1;35(9):1576-1578. doi: 10.1093/bioinformatics/bty843.
8
Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.miRNA 生物发生的调控及其与其他细胞途径的串扰。
Nat Rev Mol Cell Biol. 2019 Jan;20(1):5-20. doi: 10.1038/s41580-018-0059-1.
9
Argonaute-miRNA Complexes Silence Target mRNAs in the Nucleus of Mammalian Stem Cells.Argonaute-miRNA 复合物在哺乳动物干细胞的细胞核中沉默靶 mRNA。
Mol Cell. 2018 Sep 20;71(6):1040-1050.e8. doi: 10.1016/j.molcel.2018.07.020. Epub 2018 Aug 23.
10
Regulation of microRNA function in animals.动物中 microRNA 功能的调控。
Nat Rev Mol Cell Biol. 2019 Jan;20(1):21-37. doi: 10.1038/s41580-018-0045-7.