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解读微小RNA臂转换:进化创新与基因调控的关键

Decoding microRNA arm switching: a key to evolutionary innovation and gene regulation.

作者信息

Pinhal Danillo, Gonçalves Leandro de B, Campos Vinícius F, Patton James G

机构信息

Genomics and Molecular Evolution Laboratory, Department of Chemical and Biological Sciences, Institute of Biosciences, DCQB, IBB, UNESP, Botucatu, SP, CEP 18618-689, Brazil.

Structural Genomics Laboratory, Graduate Program in Biotechnology, Technological Development Center, Federal University of Pelotas, Pelotas, RS, Brazil.

出版信息

Cell Mol Life Sci. 2025 May 10;82(1):197. doi: 10.1007/s00018-025-05663-3.

DOI:10.1007/s00018-025-05663-3
PMID:40347284
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12065703/
Abstract

miRNA arm switching is a pivotal regulatory mechanism that allows organisms to fine-tune gene expression by selectively utilizing either the 5p or 3p strand of a miRNA duplex. This process, conserved across species, facilitates adaptive responses to developmental cues, environmental changes, and disease states. By dynamically altering strand selection, arm switching reshapes gene regulatory networks, contributing to phenotypic diversity and evolutionary innovation. Despite its growing recognition, the mechanisms driving arm switching-such as thermodynamic properties and enzyme-mediated processing-remain incompletely understood. This review synthesizes current findings, highlighting arm switching as a highly conserved mechanism with profound implications for the evolution of regulatory networks. We explore how this phenomenon expands miRNA functionality, drives phenotypic plasticity, and co-evolves with miRNA gene duplications to fuel the diversification of biological functions across taxa.

摘要

微小RNA(miRNA)臂转换是一种关键的调控机制,它使生物体能够通过选择性地利用miRNA双链体的5p或3p链来微调基因表达。这一过程在物种间保守,有助于对发育线索、环境变化和疾病状态做出适应性反应。通过动态改变链的选择,臂转换重塑基因调控网络,促进表型多样性和进化创新。尽管其越来越受到认可,但驱动臂转换的机制,如热力学性质和酶介导的加工过程,仍未完全被理解。本综述综合了当前的研究结果,强调臂转换是一种高度保守的机制,对调控网络的进化具有深远影响。我们探讨了这种现象如何扩展miRNA的功能、驱动表型可塑性,并与miRNA基因复制共同进化,以推动生物功能在不同分类群中的多样化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/6f263f91ac1a/18_2025_5663_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/15802eea6f8c/18_2025_5663_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/c956634e91fb/18_2025_5663_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/281bb99aeff4/18_2025_5663_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/6f263f91ac1a/18_2025_5663_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/15802eea6f8c/18_2025_5663_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/a039160b0c32/18_2025_5663_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/0f538dd49790/18_2025_5663_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/f6ea9ea14f4c/18_2025_5663_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/c956634e91fb/18_2025_5663_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/281bb99aeff4/18_2025_5663_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2306/12065703/6f263f91ac1a/18_2025_5663_Fig7_HTML.jpg

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本文引用的文献

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MicroRNA Transcriptomes Reveal Prevalence of Rare and Species-Specific Arm Switching Events During Zebrafish Ontogenesis.微小RNA转录组揭示斑马鱼个体发育过程中罕见及物种特异性臂转换事件的普遍性。
Evol Bioinform Online. 2024 Jul 24;20:11769343241263230. doi: 10.1177/11769343241263230. eCollection 2024.
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Endogenous transcripts direct microRNA degradation in Drosophila, and this targeted degradation is required for proper embryonic development.内源性转录本指导果蝇中的 microRNA 降解,这种靶向降解对于正常胚胎发育是必需的。
Mol Cell. 2022 Oct 20;82(20):3872-3884.e9. doi: 10.1016/j.molcel.2022.08.029. Epub 2022 Sep 22.
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MicroRNA turnover: a tale of tailing, trimming, and targets.
微小 RNA 的周转:尾巴、修剪和靶标的故事。
Trends Biochem Sci. 2023 Jan;48(1):26-39. doi: 10.1016/j.tibs.2022.06.005. Epub 2022 Jul 7.
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Single-molecule FRET uncovers hidden conformations and dynamics of human Argonaute 2.单分子 FRET 揭示了人类 Argonaute 2 的隐藏构象和动态。
Nat Commun. 2022 Jul 2;13(1):3825. doi: 10.1038/s41467-022-31480-4.
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Open Biol. 2022 May;12(5):220070. doi: 10.1098/rsob.220070. Epub 2022 May 25.
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Reversing the miRNA -5p/-3p stoichiometry reveals physiological roles and targets of miR-140 miRNAs.逆转 miRNA-5p/-3p 比例可揭示 miR-140 miRNA 的生理作用和靶标。
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MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events.微小 RNA 作为全基因组复制事件的原因和结果的指标。
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A Rapid Evolving microRNA Cluster Rewires Its Target Regulatory Networks in .一个快速进化的微小RNA簇在……中重塑其靶标调控网络
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MicroRNA roles in regeneration: Multiple lessons from zebrafish.微小 RNA 在再生中的作用:来自斑马鱼的多重启示。
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