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河水牛基因组草图

Draft genome of the river water buffalo.

作者信息

Mintoo Abdul Awal, Zhang Hailin, Chen Chunhai, Moniruzzaman Mohammad, Deng Tingxian, Anam Mahbub, Emdadul Huque Quazi Mohammad, Guang Xuanmin, Wang Ping, Zhong Zhen, Han Pengfei, Khatun Asma, Awal Tabith M, Gao Qiang, Liang Xianwei

机构信息

Lal Teer Seed Limited Dhaka Bangladesh.

Lal Teer Livestock Limited Dhaka Bangladesh.

出版信息

Ecol Evol. 2019 Feb 18;9(6):3378-3388. doi: 10.1002/ece3.4965. eCollection 2019 Mar.

Abstract

Water buffalo (), a large-sized member of the Bovidae family, is considered as an important livestock species throughout Southeast Asia. In order to better understand the molecular basis of buffalo improvement and breeding, we sequenced and assembled the genome (2n=50) of a river buffalo species from Bangladesh. Its genome size is 2.77 Gb, with a contig N50 of 25 kb and the scaffold N50 of 6.9 Mbp. Based on the assembled genome, we annotated 24,613 genes for future functional genomics studies. Phylogenetic tree analysis of cattle and water buffalo lineages showed that they diverged about 5.8-9.8 million years ago. Our findings provide an insight into the water buffalo genome which will contribute in further research on buffalo such as molecular breeding, understanding complex traits, conservation, and biodiversity.

摘要

水牛是牛科的大型成员,在整个东南亚被视为重要的家畜物种。为了更好地了解水牛改良和育种的分子基础,我们对来自孟加拉国的一种河水牛物种的基因组(2n = 50)进行了测序和组装。其基因组大小为2.77 Gb,重叠群N50为25 kb,支架N50为6.9 Mbp。基于组装好的基因组,我们注释了24,613个基因,以供未来的功能基因组学研究使用。牛和水牛谱系的系统发育树分析表明,它们在大约580万至980万年前分化。我们的研究结果为水牛基因组提供了见解,这将有助于水牛的进一步研究,如分子育种、理解复杂性状、保护和生物多样性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed9f/6434576/94f12af8376b/ECE3-9-3378-g001.jpg

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