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一种用于区分小麦 B 组和 G 组基因组的检测方法揭示了错误分类的节节麦和野生二粒小麦的品系。

A discriminatory test for the wheat B and G genomes reveals misclassified accessions of Triticum timopheevii and Triticum turgidum.

机构信息

School of Earth and Environmental Sciences, Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.

出版信息

PLoS One. 2019 Apr 10;14(4):e0215175. doi: 10.1371/journal.pone.0215175. eCollection 2019.

Abstract

The tetraploid wheat species Triticum turgidum and Triticum timopheevii are morphologically similar, and misidentification of material collected from the wild is possible. We compared published sequences for the Ppd-A1, Ppd-B1 and Ppd-G1 genes from multiple accessions of T. turgidum and T. timopheevii and devised a set of four polymerase chain reactions (PCRs), two specific for Ppd-B1 and two for Ppd-G1. We used these PCRs with 51 accessions of T. timopheevii and 20 of T. turgidum. Sixty of these accessions gave PCR products consistent with their taxon identifications, but the other eleven accessions gave anomalous results: ten accessions that were classified as T. turgidum were identified as T. timopheevii by the PCRs, and one T. timopheevii accession was typed as T. turgidum. We believe that these anomalies are not due to errors in the PCR tests because the results agree with a more comprehensive analysis of genome-wide single nucleotide polymorphisms, which similarly suggest that these eleven accessions have been misclassified. Our results therefore show that the accepted morphological tests for discrimination between T. turgidum and T. timopheevii might not be entirely robust, but that species identification can be made cheaply and quickly by PCRs directed at the Ppd-1 gene.

摘要

四倍体小麦物种硬质小麦和提莫菲维小麦在形态上相似,因此从野外采集的材料可能会被错误识别。我们比较了来自多个硬质小麦和提莫菲维小麦品种的 Ppd-A1、Ppd-B1 和 Ppd-G1 基因的已发表序列,并设计了四组聚合酶链反应(PCR),两组针对 Ppd-B1,两组针对 Ppd-G1。我们使用这些 PCR 对 51 个提莫菲维小麦品种和 20 个硬质小麦品种进行了测试。其中 60 个品种的 PCR 产物与它们的分类鉴定一致,但另外 11 个品种的结果异常:10 个被归类为硬质小麦的品种通过 PCR 被鉴定为提莫菲维小麦,而一个提莫菲维小麦品种被鉴定为硬质小麦。我们认为这些异常不是由于 PCR 测试中的错误造成的,因为这些结果与更全面的全基因组单核苷酸多态性分析结果一致,这同样表明这 11 个品种被错误分类了。因此,我们的研究结果表明,用于区分硬质小麦和提莫菲维小麦的公认形态学测试可能并不完全可靠,但可以通过针对 Ppd-1 基因的 PCR 快速而廉价地进行物种鉴定。

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