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细菌精氨酸激酶在变形菌门中具有高度偏态的分布。

Bacterial arginine kinases have a highly skewed distribution within the proteobacteria.

作者信息

Fraga Dean, Stock Katie, Aryal Manish, Demoll Christopher, Fannin Lindsay, Snider Mark J

机构信息

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America; Department of Biology, The College of Wooster, Wooster, OH 44691, United States of America.

Program in Biochemistry and Molecular Biology, The College of Wooster, Wooster, OH 44691, United States of America.

出版信息

Comp Biochem Physiol B Biochem Mol Biol. 2019 Jul;233:60-71. doi: 10.1016/j.cbpb.2019.04.001. Epub 2019 Apr 10.

Abstract

Phosphagen kinases (PKs) are known to be distributed throughout the animal kingdom, but have recently been discovered in some protozoan and bacterial species. A recent search of the available bacterial genomes revealed 49 unique sequences that appear to code for an arginine kinase (AK). The distribution of sequences was highly skewed with thirty nine out the forty nine sequences being found in six Proteobacteria classes (α, β, δ, γ, ε, and ζ) which represented 46.6% of the 61,335 bacterial genomes available at JGI-IMG/M website. Moreover, twenty one of the unique and metagenome bAK sequences identified were from δ-Proteobacteria despite these representing only 0.88% of the total genomes available. Phylogenetic analyses revealed that the bacterial AK sequences were interpersed between basal species such as cnidarians, sponges and protozoa, displaying an unstable clustering that was dependent upon the parameters chosen for phylogenetic analysis. Three of these putative bacterial AK genes were cloned into the pET45 expression vector, expressed, and biochemically confirmed to be capable of phosphorylating arginine using ATP. Results of the kinetic analyses of the putative bAKs from Ahrensia, D. autotrophicum, and O. profundus show that the catalytic efficiencies with respect to arginine for each enzyme, measured at 10-10 M s, fall within the range expected for competent arginine kinases.

摘要

磷酸原激酶(PKs)已知在整个动物界都有分布,但最近在一些原生动物和细菌物种中也被发现。最近对可用细菌基因组的搜索揭示了49个独特序列,这些序列似乎编码精氨酸激酶(AK)。序列分布高度不均衡,49个序列中有39个存在于六个变形菌纲(α、β、δ、γ、ε和ζ)中,这些纲在JGI-IMG/M网站上的61335个可用细菌基因组中占46.6%。此外,所鉴定的21个独特的宏基因组bAK序列来自δ-变形菌纲,尽管这些基因组仅占可用总基因组的0.88%。系统发育分析表明,细菌AK序列散布在诸如刺胞动物、海绵和原生动物等基础物种之间,显示出不稳定的聚类,这取决于为系统发育分析选择的参数。其中三个假定的细菌AK基因被克隆到pET45表达载体中,进行表达,并通过生化方法确认能够利用ATP磷酸化精氨酸。对来自阿伦西亚菌、自养脱硫菌和深海嗜压菌的假定bAK进行动力学分析的结果表明,在10-10 M·s下测量的每种酶对精氨酸的催化效率落在合格精氨酸激酶预期的范围内。

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