Institute of Molecular Sciences and Engineering, Shandong University, Qingdao, Binhai Road 72, Qingdao 266237, China.
Phys Chem Chem Phys. 2019 Apr 24;21(17):8925-8932. doi: 10.1039/c9cp00536f.
Computations using the combined quantum mechanical/molecular mechanical (QM/MM) method were performed to investigate excess electron attachment to and detachment from aqueous deoxyribonucleosides (dRNs). The QM/MM vertical electron affinities (VEAs) of four dRNs are higher than the values of the corresponding nucleobases by ∼0.20 eV. The QM/MM diabatic electron affinities (AEAs) are much larger than the calculations of the implicit solvent model. Bulk water induces evident VEA and AEA increases and boosts the vertical detachment energies by over 1.20 eV. It affects excess electron attachment to and detachment from aqueous dRNs and stabilizes the anions. Moreover, the water molecules around deoxyadenosine (dA) anions form intermolecular hydrogen bonds with dA and break the intramolecular hydrogen bond of dA which had been found in the gas structure. In vertical electron attachment, ∼50% of excess electrons would be delocalized over the water molecules around the dRNs. The anionic structural relaxations cause the transfer of ∼-0.30 e excess electrons from the water molecules to the dRN nucleobases. However, the main excess electrons (∼-0.76 e) would be localized on dRN nucleobases in the stable anionic structure.
采用量子力学/分子力学(QM/MM)联合方法进行计算,研究了水溶液脱氧核糖核苷酸(dRN)对过剩电子的捕获和释放。四种 dRN 的 QM/MM 垂直电子亲和能(VEA)比相应碱基高约 0.20 eV。QM/MM 非绝热电子亲和能(AEA)远大于隐溶剂模型的计算值。水的体相诱导明显增加 VEA 和 AEA,并使垂直离解能提高超过 1.20 eV。它影响水溶液中 dRN 对过剩电子的捕获和释放,并稳定阴离子。此外,脱氧腺苷(dA)阴离子周围的水分子与 dA 形成分子间氢键,打破了气相结构中存在的 dA 的分子内氢键。在垂直电子捕获中,约 50%的过剩电子会离域到 dRN 周围的水分子上。阴离子结构弛豫导致约-0.30 e 的过剩电子从水分子转移到 dRN 碱基。然而,在稳定的阴离子结构中,主要的过剩电子(约-0.76 e)将定域在 dRN 碱基上。