Organismal and Evolutionary Biology Research Programme, Faculty of Biological and environmental sciences, University of Helsinki, P.O. Box 65, FI-00014, Helsinki, Finland.
Organismal Biology Department, School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK.
BMC Genomics. 2019 Apr 16;20(1):301. doi: 10.1186/s12864-019-5665-6.
Adapting to changes in the environment is the foundation of species survival, and is usually thought to be a gradual process. However, transposable elements (TEs), epigenetic modifications, and/or genetic material acquired from other organisms by means of horizontal gene transfer (HGTs), can also lead to novel adaptive traits. Social insects form dense societies, which attract and maintain extra- and intracellular accessory inhabitants, which may facilitate gene transfer between species. The wood ant Formica exsecta (Formicidae; Hymenoptera), is a common ant species throughout the Palearctic region. The species is a well-established model for studies of ecological characteristics and evolutionary conflict.
In this study, we sequenced and assembled draft genomes for F. exsecta and its endosymbiont Wolbachia. The F. exsecta draft genome is 277.7 Mb long; we identify 13,767 protein coding genes, for which we provide gene ontology and protein domain annotations. This is also the first report of a Wolbachia genome from ants, and provides insights into the phylogenetic position of this endosymbiont. We also identified multiple horizontal gene transfer events (HGTs) from Wolbachia to F. exsecta. Some of these HGTs have also occurred in parallel in multiple other insect genomes, highlighting the extent of HGTs in eukaryotes.
We present the first draft genome of ant F. exsecta, and its endosymbiont Wolbachia (wFex), and show considerable rates of gene transfer from the symbiont to the host. We expect that especially the F. exsecta genome will be valuable resource in further exploration of the molecular basis of the evolution of social organization.
适应环境的变化是物种生存的基础,通常被认为是一个渐进的过程。然而,转座元件(TEs)、表观遗传修饰和/或通过水平基因转移(HGT)从其他生物体获得的遗传物质,也可以导致新的适应性特征。社会性昆虫形成密集的社会,吸引和维持细胞外和细胞内的附属居民,这可能促进物种间的基因转移。木蚁 Formica exsecta(Formicidae;膜翅目)是整个古北地区常见的蚂蚁物种。该物种是研究生态特征和进化冲突的成熟模型。
在这项研究中,我们对 F. exsecta 及其共生菌沃尔巴克氏体(Wolbachia)进行了测序和组装。F. exsecta 草图基因组长 277.7 Mb;我们鉴定了 13767 个编码蛋白的基因,并提供了基因本体和蛋白结构域注释。这也是首次报道蚂蚁的沃尔巴克氏体基因组,为该内共生体的系统发育位置提供了见解。我们还鉴定了多个来自沃尔巴克氏体到 F. exsecta 的水平基因转移事件(HGTs)。其中一些 HGTs也在其他昆虫基因组中平行发生,突出了真核生物中 HGTs 的广泛程度。
我们展示了蚂蚁 F. exsecta 的第一个草图基因组及其内共生菌沃尔巴克氏体(wFex),并显示了来自共生菌到宿主的相当高的基因转移率。我们预计,特别是 F. exsecta 基因组将成为进一步探索社会组织进化的分子基础的宝贵资源。