Department of Biology, East Carolina University, Greenville, North Carolina, USA.
Hubbard Center for Genome Studies, University of New Hampshire, Durham, New Hampshire, USA.
BMC Evol Biol. 2019 Apr 18;19(1):85. doi: 10.1186/s12862-019-1410-7.
Color and pattern phenotypes have clear implications for survival and reproduction in many species. However, the mechanisms that produce this coloration are still poorly characterized, especially at the genomic level. Here we have taken a transcriptomics-based approach to elucidate the underlying genetic mechanisms affecting color and pattern in a highly polytypic poison frog. We sequenced RNA from the skin from four different color morphs during the final stage of metamorphosis and assembled a de novo transcriptome. We then investigated differential gene expression, with an emphasis on examining candidate color genes from other taxa.
Overall, we found differential expression of a suite of genes that control melanogenesis, melanocyte differentiation, and melanocyte proliferation (e.g., tyrp1, lef1, leo1, and mitf) as well as several differentially expressed genes involved in purine synthesis and iridophore development (e.g., arfgap1, arfgap2, airc, and gart).
Our results provide evidence that several gene networks known to affect color and pattern in vertebrates play a role in color and pattern variation in this species of poison frog.
颜色和图案表型对许多物种的生存和繁殖有明显的影响。然而,产生这种颜色的机制仍未被很好地描述,尤其是在基因组水平上。在这里,我们采用基于转录组学的方法来阐明影响高度多态性毒蛙颜色和图案的潜在遗传机制。我们在变态后期从四个不同颜色形态的皮肤中提取 RNA 并进行了从头转录组组装。然后,我们研究了差异基因表达,重点研究了来自其他分类群的候选颜色基因。
总体而言,我们发现了控制黑色素生成、黑色素细胞分化和黑色素细胞增殖的一系列基因的差异表达(例如 tyrp1、lef1、leo1 和 mitf),以及几个参与嘌呤合成和虹彩细胞发育的差异表达基因(例如 arfgap1、arfgap2、airc 和 gart)。
我们的结果提供了证据,表明在脊椎动物中已知影响颜色和图案的几个基因网络在该毒蛙物种的颜色和图案变异中发挥作用。