文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

模拟贮藏啤酒酿造条件下×杂交种的实验室进化

Laboratory Evolution of a × Hybrid Under Simulated Lager-Brewing Conditions.

作者信息

Gorter de Vries Arthur R, Voskamp Maaike A, van Aalst Aafke C A, Kristensen Line H, Jansen Liset, van den Broek Marcel, Salazar Alex N, Brouwers Nick, Abeel Thomas, Pronk Jack T, Daran Jean-Marc G

机构信息

Industrial Microbiology, Department of Biotechnology Delft, Delft University of Technology, Delft, Netherlands.

Delft Bioinformatics Lab, Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands.

出版信息

Front Genet. 2019 Mar 29;10:242. doi: 10.3389/fgene.2019.00242. eCollection 2019.


DOI:10.3389/fgene.2019.00242
PMID:31001314
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6455053/
Abstract

lager-brewing yeasts are domesticated hybrids of x that display extensive inter-strain chromosome copy number variation and chromosomal recombinations. It is unclear to what extent such genome rearrangements are intrinsic to the domestication of hybrid brewing yeasts and whether they contribute to their industrial performance. Here, an allodiploid laboratory hybrid of and was evolved for up to 418 generations on wort under simulated lager-brewing conditions in six independent sequential batch bioreactors. Characterization of 55 single-cell isolates from the evolved cultures showed large phenotypic diversity and whole-genome sequencing revealed a large array of mutations. Frequent loss of heterozygosity involved diverse, strain-specific chromosomal translocations, which differed from those observed in domesticated, aneuploid brewing strains. In contrast to the extensive aneuploidy of domesticated strains, the evolved isolates only showed limited (segmental) aneuploidy. Specific mutations could be linked to calcium-dependent flocculation, loss of maltotriose utilization and loss of mitochondrial activity, three industrially relevant traits that also occur in domesticated strains. This study indicates that fast acquisition of extensive aneuploidy is not required for genetic adaptation of × hybrids to brewing environments. In addition, this work demonstrates that, consistent with the diversity of brewing strains for maltotriose utilization, domestication under brewing conditions can result in loss of this industrially relevant trait. These observations have important implications for the design of strategies to improve industrial performance of novel laboratory-made hybrids.

摘要

拉格啤酒酿造酵母是x的驯化杂种,表现出广泛的菌株间染色体拷贝数变异和染色体重组。目前尚不清楚这种基因组重排在杂种酿造酵母驯化过程中的内在程度,以及它们是否对其工业性能有贡献。在这里,一个和的异源二倍体实验室杂种在六个独立的连续分批生物反应器中,于模拟拉格啤酒酿造条件下的麦芽汁中进化了多达418代。对进化培养物中的55个单细胞分离株进行表征,显示出很大的表型多样性,全基因组测序揭示了大量的突变。杂合性的频繁丧失涉及多种菌株特异性的染色体易位,这与在驯化的非整倍体酿造菌株中观察到的不同。与驯化菌株广泛的非整倍体情况相反,进化后的分离株仅显示出有限的(片段性)非整倍体。特定的突变可能与钙依赖性絮凝、麦芽三糖利用能力丧失和线粒体活性丧失有关,这三个工业相关性状在驯化菌株中也会出现。这项研究表明,×杂种对酿造环境的遗传适应并不需要快速获得广泛的非整倍体。此外,这项工作表明,与麦芽三糖利用的酿造菌株多样性一致,在酿造条件下的驯化可能导致这种工业相关性状的丧失。这些观察结果对改进新型实验室制造杂种的工业性能的策略设计具有重要意义。

相似文献

[1]
Laboratory Evolution of a × Hybrid Under Simulated Lager-Brewing Conditions.

Front Genet. 2019-3-29

[2]
Himalayan Genome Sequences Reveal Genetic Markers Explaining Heterotic Maltotriose Consumption by Saccharomyces pastorianus Hybrids.

Appl Environ Microbiol. 2019-10-30

[3]
Industrially Applicable Lager Yeast Hybrids with a Unique Genomic Architecture: Creation and Characterization.

Appl Environ Microbiol. 2021-1-15

[4]
The Genome Sequence of Saccharomyces eubayanus and the Domestication of Lager-Brewing Yeasts.

Mol Biol Evol. 2015-11

[5]
Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains.

Appl Environ Microbiol. 2015-9

[6]
In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation.

PLoS Genet. 2019-4-4

[7]
S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond.

FEMS Yeast Res. 2015-5

[8]
Beyond for modern lager brews: Exploring non- hybrids with heterotic maltotriose consumption and novel aroma profile.

Front Microbiol. 2022-11-10

[9]
Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Lager Brewing Yeast.

Front Microbiol. 2017-9-8

[10]
Characterization of maltotriose transporters from the Saccharomyces eubayanus subgenome of the hybrid Saccharomyces pastorianus lager brewing yeast strain Weihenstephan 34/70.

Lett Appl Microbiol. 2012-11-21

引用本文的文献

[1]
Positive selection of efficient ethanol producers from xylose at 45 °C in the yeast Ogataea polymorpha.

Sci Rep. 2025-7-22

[2]
Distinct genome stabilization procedures lead to phenotypic variability in newly generated interspecific yeast hybrids.

Front Microbiol. 2025-1-29

[3]
Wild Patagonian yeast improve the evolutionary potential of novel interspecific hybrid strains for lager brewing.

PLoS Genet. 2024-6

[4]
Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism.

PLoS Biol. 2023-11

[5]
Lager Yeast Design Through Meiotic Segregation of a × Hybrid.

Front Fungal Biol. 2021-9-16

[6]
Rapid evolutionary repair by secondary perturbation of a primary disrupted transcriptional network.

EMBO Rep. 2023-6-5

[7]
Loss of Heterozygosity and Its Importance in Evolution.

J Mol Evol. 2023-6

[8]
Adaptive Laboratory Evolution of Microorganisms: Methodology and Application for Bioproduction.

Microorganisms. 2022-12-29

[9]
Bend or break: how biochemically versatile molecules enable metabolic division of labor in clonal microbial communities.

Genetics. 2021-10-2

[10]
Adaptive response to wine selective pressures shapes the genome of a interspecies hybrid.

Microb Genom. 2021-8

本文引用的文献

[1]
Fitness benefits of loss of heterozygosity in hybrids.

Genome Res. 2019-9-23

[2]
Temperature preference can bias parental genome retention during hybrid evolution.

PLoS Genet. 2019-9-16

[3]
In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation.

PLoS Genet. 2019-4-4

[4]
Allele-specific genome editing using CRISPR-Cas9 is associated with loss of heterozygosity in diploid yeast.

Nucleic Acids Res. 2019-2-20

[5]
Genetic dissection of interspecific differences in yeast thermotolerance.

Nat Genet. 2018-10-8

[6]
Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in CBS 12357.

Front Microbiol. 2018-8-10

[7]
Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains.

FEMS Yeast Res. 2018-12-1

[8]
CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus.

Microb Cell Fact. 2017-12-5

[9]
Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D.

FEMS Yeast Res. 2017-11-1

[10]
Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Lager Brewing Yeast.

Front Microbiol. 2017-9-8

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索