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鉴定化疗耐药结直肠癌细胞中的差异表达环状 RNA。

Identification of differentially expressed circular RNAs in chemoresistant colorectal cancer.

机构信息

UKM Medical Molecular Biology Institute (UMBI), Universiti Kebangsaan Malaysia, Cheras, 56000 Kuala Lumpur, Malaysia.

Department of Pathology, Faculty of Medicine, UKM Medical Center, Universiti Kebangsaan Malaysia, Cheras, 56000 Kuala Lumpur, Malaysia.

出版信息

Epigenomics. 2019 Jun;11(8):875-884. doi: 10.2217/epi-2019-0042. Epub 2019 Apr 25.

Abstract

Chemoresistance in colorectal cancer (CRC) has become a burden in treating the disease effectively. Circular RNAs (circRNAs) are a type of noncoding RNA that were found to be important in cellular homeostasis. The involvement of circRNAs in relation to chemoresistance in other types of cancers has also been reported. This study aims to identify the differentially expressed circRNAs between chemoresistant and chemosensitive CRC cells. We developed a chemoresistant cell line model and profiled the circRNAs via microarray. We further validated the expression of two circRNAs in 25 formalin-fixed paraffin-embedded (FFPE) tissue specimens (13 nonresponders and 12 responders) via quantitative polymerase chain reaction (qPCR).  We found that there were 773 upregulated and 732 downregulated circRNAs between the chemoresistant and chemosensitive HCT-116 cells. We found that hsa_circ_32883 could be a promising biotarget.

摘要

结直肠癌(CRC)的化疗耐药性已成为有效治疗该疾病的负担。环状 RNA(circRNA)是一类非编码 RNA,其在细胞内稳态中具有重要作用。circRNAs 与其他类型癌症的化疗耐药性有关的参与也已有报道。本研究旨在鉴定化疗耐药性和化疗敏感性 CRC 细胞之间差异表达的 circRNAs。我们开发了一种化疗耐药细胞系模型,并通过微阵列对 circRNAs 进行了分析。我们进一步通过定量聚合酶链反应(qPCR)在 25 份福尔马林固定石蜡包埋(FFPE)组织标本(13 名无反应者和 12 名反应者)中验证了两个 circRNAs 的表达。我们发现,在化疗耐药性和化疗敏感性 HCT-116 细胞之间有 773 个上调和 732 个下调的 circRNAs。我们发现 hsa_circ_32883 可能是一个有前途的生物靶标。

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