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结直肠癌诊断、预后和治疗中环RNA生物标志物的系统分析

Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer.

作者信息

Xiao Yafei, Qiu Mengyuan, Tan Cong, Huang Wanting, Hu Shaowen, Jiang Xiaowei, Guo Mingjie, Wang Congcong, Liang Jingyu, Wu Yimei, Li Mengmeng, Li Quanying, Qin Changjiang

机构信息

Department of General Surgery, Huaihe Hospital of Henan University, Kaifeng, China.

Department of Neurology, Peking University People's Hospital, Peking University School of Medicine, Beijing, China.

出版信息

Front Genet. 2022 Oct 12;13:938672. doi: 10.3389/fgene.2022.938672. eCollection 2022.

Abstract

As the third most common cancer and the second leading cause of cancer death worldwide, colorectal cancer (CRC) poses a serious threat to people's health. In recent years, circRNA has been widely reported as a new biomarker in CRC, but a comprehensive summary and analysis is lacking. This study aims to evaluate the diagnostic, therapeutic and prognostic significance of circRNAs in CRC by systematically analysing their expression patterns, biological functions and clinical significance in CRC. The literature on circRNA in CRC was searched in the PubMed database and included for analysis after screening according to strict inclusion and exclusion criteria. The UALCAN online tool was used to obtain host gene expression data. The miRTargetLink 2.0 was used to predict target genes for miRNAs action in CRC patients. Cytoscape was used to construct circRNA-miRNA-mRNA interaction networks. From the 236 included papers, we identified 217 circRNAs and their associated 108 host genes and 145 miRNAs. Among the 145 miRNAs, 27 miRNAs had no corresponding target genes. After prediction of target genes and differential analysis, a total of 25 target genes were obtained and a circRNA-miRNA-mRNA interaction network was constructed. Among the 217 circRNAs, 74 were associated with diagnosis, 160 with treatment and 51 with prognosis. And 154 of them function as oncogenes while 58 as tumour suppressor genes. In addition, these circRNAs include 32 exosomal circRNAs, which have unique advantages as biomarkers. In total, we summarize and analyze the expression patterns, biological functions and clinical significance of circRNAs in CRC. In addition, we constructed some new circRNA-miRNA-mRNA regulatory axes based on the miRNAs sponged by circRNAs.

摘要

作为全球第三大常见癌症和第二大致癌死亡原因,结直肠癌(CRC)对人们的健康构成严重威胁。近年来,环状RNA(circRNA)作为CRC中的一种新型生物标志物已被广泛报道,但缺乏全面的总结和分析。本研究旨在通过系统分析circRNA在CRC中的表达模式、生物学功能及临床意义,评估其在CRC诊断、治疗及预后方面的意义。在PubMed数据库中检索关于CRC中circRNA的文献,并根据严格的纳入和排除标准筛选后纳入分析。使用UALCAN在线工具获取宿主基因表达数据。使用miRTargetLink 2.0预测CRC患者中miRNA作用的靶基因。使用Cytoscape构建circRNA-miRNA-mRNA相互作用网络。从纳入的236篇论文中,我们鉴定出217种circRNA及其相关的108个宿主基因和145个miRNA。在这145个miRNA中,27个miRNA没有相应的靶基因。经过靶基因预测和差异分析,共获得25个靶基因,并构建了circRNA-miRNA-mRNA相互作用网络。在217种circRNA中(其中),74种与诊断相关,160种与治疗相关,51种与预后相关。其中154种发挥癌基因作用,58种发挥肿瘤抑制基因作用。此外,这些circRNA包括32种外泌体circRNA,它们作为生物标志物具有独特优势。我们全面总结和分析了circRNA在CRC中的表达模式、生物学功能及临床意义。此外,我们基于circRNA所吸附的miRNA构建了一些新的circRNA-miRNA-mRNA调控轴。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c2f/9597305/667265ebf8de/fgene-13-938672-g001.jpg

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