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Tempus xT下一代靶向肿瘤测序检测的临床验证

Clinical validation of the tempus xT next-generation targeted oncology sequencing assay.

作者信息

Beaubier Nike, Tell Robert, Lau Denise, Parsons Jerod R, Bush Stephen, Perera Jason, Sorrells Shelly, Baker Timothy, Chang Alan, Michuda Jackson, Iguartua Catherine, MacNeil Shelley, Shah Kaanan, Ellis Philip, Yeatts Kimberly, Mahon Brett, Taxter Timothy, Bontrager Martin, Khan Aly, Huether Robert, Lefkofsky Eric, White Kevin P

机构信息

Tempus Labs Inc., Chicago, IL 60654, USA.

出版信息

Oncotarget. 2019 Mar 22;10(24):2384-2396. doi: 10.18632/oncotarget.26797.

Abstract

We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration calling and whole transcriptome RNA sequencing for unbiased identification of gene fusion events. The assay was validated with a combination of clinical specimens and cell lines, and recorded a sensitivity of 99.1% for single nucleotide variants, 98.1% for indels, 99.9% for gene rearrangements, 98.4% for copy number variations, and 99.9% for microsatellite instability detection. This assay presents a wide array of data for clinical management and clinical trial enrollment while conserving limited tissue.

摘要

我们开发并在临床上验证了一种杂交捕获下一代测序检测方法,用于检测实体瘤和血液系统恶性肿瘤中的体细胞改变和微卫星不稳定性。这种靶向肿瘤检测方法利用肿瘤-正常匹配样本进行高精度的体细胞改变检测,并利用全转录组RNA测序无偏倚地鉴定基因融合事件。该检测方法通过临床标本和细胞系的组合进行了验证,对于单核苷酸变异的灵敏度为99.1%,插入缺失为98.1%,基因重排为99.9%,拷贝数变异为98.4%,微卫星不稳定性检测为99.9%。该检测方法在保留有限组织的同时,为临床管理和临床试验入组提供了大量数据。

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