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全基因组关联研究确定与晕厥和晕倒相关的染色体 2q32.1 上的位置。

Genome-wide association study identifies locus at chromosome 2q32.1 associated with syncope and collapse.

机构信息

Laboratory for Molecular Cardiology, Department of Cardiology, The Heart Centre, Rigshospitalet (Copenhagen University Hospital), Copenhagen, Denmark.

Danish National Research Foundation Centre for Cardiac Arrhythmia, Copenhagen, Denmark.

出版信息

Cardiovasc Res. 2020 Jan 1;116(1):138-148. doi: 10.1093/cvr/cvz106.

DOI:10.1093/cvr/cvz106
PMID:31049583
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6918066/
Abstract

AIMS

Syncope is a common condition associated with frequent hospitalization or visits to the emergency department. Family aggregation and twin studies have shown that syncope has a heritable component. We investigated whether common genetic variants predispose to syncope and collapse.

METHODS AND RESULTS

We used genome-wide association data on syncope on 408 961 individuals with European ancestry from the UK Biobank study. In a replication study, we used the Integrative Psychiatric Research Consortium (iPSYCH) cohort (n = 86 189), to investigate the risk of incident syncope stratified by genotype carrier status. We report on a genome-wide significant locus located on chromosome 2q32.1 [odds ratio = 1.13, 95% confidence interval (CI) 1.10-1.17, P = 5.8 × 10-15], with lead single nucleotide polymorphism rs12465214 in proximity to the gene zinc finger protein 804a (ZNF804A). This association was also shown in the iPSYCH cohort, where homozygous carriers of the C allele conferred an increased hazard ratio (1.30, 95% CI 1.15-1.46, P = 1.68 × 10-5) of incident syncope. Quantitative polymerase chain reaction analysis showed ZNF804A to be expressed most abundantly in brain tissue.

CONCLUSION

We identified a genome-wide significant locus (rs12465214) associated with syncope and collapse. The association was replicated in an independent cohort. This is the first genome-wide association study to associate a locus with syncope and collapse.

摘要

目的

晕厥是一种常见病症,常导致住院或频繁就诊于急诊。家族聚集性和双胞胎研究表明,晕厥具有遗传成分。我们研究了常见的遗传变异是否易导致晕厥和晕厥发作。

方法和结果

我们使用英国生物库研究中 408961 名具有欧洲血统的个体的晕厥全基因组关联数据。在一项复制研究中,我们使用综合精神病学研究联盟(iPSYCH)队列(n=86189),根据基因型携带者状态分层,研究晕厥发作的风险。我们报告了一个位于染色体 2q32.1 上的全基因组显著位置[比值比=1.13,95%置信区间(CI)1.10-1.17,P=5.8×10-15],与基因锌指蛋白 804a(ZNF804A)附近的 SNP rs12465214相关。该关联在 iPSYCH 队列中也得到了证实,C 等位基因纯合携带者发生晕厥的风险比(1.30,95%CI 1.15-1.46,P=1.68×10-5)增加。定量聚合酶链反应分析显示,ZNF804A 在脑组织中表达最丰富。

结论

我们确定了与晕厥和晕厥发作相关的全基因组显著位置(rs12465214)。该关联在独立队列中得到了复制。这是首次全基因组关联研究将一个基因座与晕厥和晕厥发作相关联。

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