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探究深地壳水热活动区 Deccan 陷阱中的压敏/嗜压微生物群落及其压敏耐受的基因组基础。

Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps.

机构信息

Environmental Microbiology and Genomics Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.

School of Bioscience, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.

出版信息

Extremophiles. 2019 Jul;23(4):421-433. doi: 10.1007/s00792-019-01094-8. Epub 2019 May 2.

DOI:10.1007/s00792-019-01094-8
PMID:31049708
Abstract

The deep biosphere is often characterized by multiple extreme physical-chemical conditions, of which pressure is an important parameter that influences life but remains less studied. This geomicrobiology study was designed to understand the response of a subterranean microbial community of the Deccan traps to high-pressure conditions and to elucidate their genomic properties. Groundwater from a deep basaltic aquifer of the Deccan traps was used to ascertain the community response to 25 MPa and 50 MPa pressure following enrichment in high-salt and low-salt organic media. Quantitative PCR data indicated a decrease in bacterial and archaeal cell numbers with increasing pressure. 16S rRNA gene sequencing displayed substantial changes in the microbial community in which Acidovorax appeared to be the most dominant genus in the low-salt medium and Microbacteriaceae emerged as the major family in the high-salt medium under both pressure conditions. Genes present in metagenome-associated genomes which have previously been associated with piezotolerance include those related to nutrient uptake and extracytoplasmic stress (omp, rseC), protein folding and unfolding (dnaK, groEL and others), and DNA repair mechanisms (mutT, uvr and others). We hypothesize that these genes facilitate tolerance to high pressure by certain groups of microbes residing in subsurface Deccan traps.

摘要

深部生物圈通常具有多种极端的物理化学条件,其中压力是影响生命的一个重要参数,但研究较少。本地球微生物学研究旨在了解德干陷阱地下微生物群落对高压条件的反应,并阐明其基因组特性。从德干陷阱玄武岩含水层中采集地下水,在高盐和低盐有机培养基中进行富集,以确定该群落对 25 MPa 和 50 MPa 压力的反应。定量 PCR 数据表明,随着压力的增加,细菌和古菌细胞数量减少。16S rRNA 基因测序显示微生物群落发生了显著变化,其中在低盐培养基中,食酸菌属似乎是最占优势的属,而在高盐培养基中,微杆菌科在两种压力条件下均成为主要科。宏基因组相关基因组中存在的先前与压敏性相关的基因包括与营养吸收和细胞外应激(omp、rseC)、蛋白质折叠和展开(dnaK、groEL 等)以及 DNA 修复机制(mutT、uvr 等)相关的基因。我们假设这些基因通过居住在地下德干陷阱中的某些微生物群来促进对高压的耐受。

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Microbial Diversity in Extreme Marine Habitats and Their Biomolecules.
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