Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California.
Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California.
Biophys J. 2019 May 21;116(10):1898-1906. doi: 10.1016/j.bpj.2019.04.005. Epub 2019 Apr 11.
A number of enzymes reportedly exhibit enhanced diffusion in the presence of their substrates, with a Michaelis-Menten-like concentration dependence. Although no definite explanation of this phenomenon has emerged, a physical picture of enzyme self-propulsion using energy from the catalyzed reaction has been widely considered. Here, we present a kinematic and thermodynamic analysis of enzyme self-propulsion that is independent of any specific propulsion mechanism. Using this theory, along with biophysical data compiled for all enzymes so far shown to undergo enhanced diffusion, we show that the propulsion speed required to generate experimental levels of enhanced diffusion exceeds the speeds of well-known active biomolecules, such as myosin, by several orders of magnitude. Furthermore, the minimal power dissipation required to account for enzyme enhanced diffusion by self-propulsion markedly exceeds the chemical power available from enzyme-catalyzed reactions. Alternative explanations for the observation of enhanced enzyme diffusion therefore merit stronger consideration.
一些酶据称在其底物存在的情况下表现出增强的扩散,具有类似米氏-门坦的浓度依赖性。尽管尚未出现对此现象的明确解释,但利用催化反应产生的能量进行酶自主推进的物理图像已被广泛考虑。在这里,我们提出了一种与任何特定推进机制无关的酶自主推进的运动学和热力学分析。使用该理论以及迄今为止所有表现出增强扩散的酶的生物物理数据,我们表明,产生实验水平增强扩散所需的推进速度超过了肌球蛋白等知名活性生物分子的速度,超过几个数量级。此外,为了通过自主推进来解释酶增强扩散所需要的最小功率耗散明显超过了酶催化反应提供的化学功率。因此,需要更强烈地考虑观察到的增强酶扩散的替代解释。