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基因组时代野生动物疾病研究的期望与挑战:运用类似 horizon scan 的方法进行预测。

The Expectations and Challenges of Wildlife Disease Research in the Era of Genomics: Forecasting with a Horizon Scan-like Exercise.

机构信息

Department of Biology, Duke University, Durham, NC, USA.

Department of Forestry & Natural Resources, Purdue University, West Lafayette, IN.

出版信息

J Hered. 2019 May 7;110(3):261-274. doi: 10.1093/jhered/esz001.

DOI:10.1093/jhered/esz001
PMID:31067326
Abstract

The outbreak and transmission of disease-causing pathogens are contributing to the unprecedented rate of biodiversity decline. Recent advances in genomics have coalesced into powerful tools to monitor, detect, and reconstruct the role of pathogens impacting wildlife populations. Wildlife researchers are thus uniquely positioned to merge ecological and evolutionary studies with genomic technologies to exploit unprecedented "Big Data" tools in disease research; however, many researchers lack the training and expertise required to use these computationally intensive methodologies. To address this disparity, the inaugural "Genomics of Disease in Wildlife" workshop assembled early to mid-career professionals with expertise across scientific disciplines (e.g., genomics, wildlife biology, veterinary sciences, and conservation management) for training in the application of genomic tools to wildlife disease research. A horizon scanning-like exercise, an activity to identify forthcoming trends and challenges, performed by the workshop participants identified and discussed 5 themes considered to be the most pressing to the application of genomics in wildlife disease research: 1) "Improving communication," 2) "Methodological and analytical advancements," 3) "Translation into practice," 4) "Integrating landscape ecology and genomics," and 5) "Emerging new questions." Wide-ranging solutions from the horizon scan were international in scope, itemized both deficiencies and strengths in wildlife genomic initiatives, promoted the use of genomic technologies to unite wildlife and human disease research, and advocated best practices for optimal use of genomic tools in wildlife disease projects. The results offer a glimpse of the potential revolution in human and wildlife disease research possible through multi-disciplinary collaborations at local, regional, and global scales.

摘要

病原体的爆发和传播导致生物多样性以空前的速度减少。基因组学的最新进展已经汇聚成强大的工具,用于监测、检测和重建影响野生动物种群的病原体的作用。因此,野生动物研究人员具有独特的优势,可以将生态学和进化研究与基因组技术相结合,利用疾病研究中前所未有的“大数据”工具;然而,许多研究人员缺乏使用这些计算密集型方法所需的培训和专业知识。为了解决这一差距,首届“野生动物疾病基因组学”研讨会召集了具有跨学科专业知识(例如,基因组学、野生动物生物学、兽医科学和保护管理)的早期到中期职业生涯专业人员,以培训将基因组工具应用于野生动物疾病研究。研讨会参与者进行了一次类似于地平线扫描的活动,即确定即将出现的趋势和挑战的活动,确定并讨论了 5 个被认为是基因组在野生动物疾病研究中最紧迫的应用主题:1)“改善沟通”,2)“方法和分析进展”,3)“转化为实践”,4)“整合景观生态学和基因组学”,以及 5)“新兴的新问题”。来自地平线扫描的广泛解决方案具有国际范围,详细说明了野生动物基因组计划的缺陷和优势,促进了使用基因组技术将野生动物和人类疾病研究结合起来,并倡导了在野生动物疾病项目中最佳使用基因组工具的最佳实践。这些结果展示了通过地方、区域和全球各级的多学科合作,在人类和野生动物疾病研究方面可能发生的潜在革命。

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